Transcript 367704

Transcript

ID CARD

MetamORF ID

367704

ENSMUST00000023312

Name

Alcam-201

Strand

Biotype

protein_coding

Start-end positions

52248996-52454074

CDS Start-stop positions

52253149-52452465

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:11658

Aliases

AI853494,
Alcam, BEN, CD166,
DM-GRASP, ENSMUSG00000022636, MGI:1313266,
MuSC, NCBI:11658, OFF:Alcam,
SC1

Chr 16

ORFs

76 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
794370	66	TTG ...	LAI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
694241	144	CTG ...	LPR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
367703	42	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
793583	51	CTG ...	LCH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
693029	102	GTG ...	VHG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
953159	129	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF
377000	96	ATG ...	MVH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
375343	69	TTG ...	LQE ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell
952917	204	CTG ...	LTT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
371067	30	TTG ...	LIQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
694949	30	GTG ...	VFG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
376468	135	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
377296	156	TTG ...	LSC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
696391	102	GTG ...	VQL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Liver
376915	105	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
952891	57	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
371051	30	ATG ...	MMS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain
371807	84	GTG ...	VDF ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
691993	78	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
695233	69	GTG ...	VIR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
373262	30	GTG ...	VMR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
375847	60	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
953017	48	ATC ...	ITK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
377223	30	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
953668	72	AGG ...	RKI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
373640	60	TTG ...	LHS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
372238	66	CTG ...	LFC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
953480	66	ATA ...	IKS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
697537	33	CTG ...	LTY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
369243	33	GTG ...	VHA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
699226	63	TTG ...	LTK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
697610	183	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC
375375	48	CTG ...	LGT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
377157	183	CTG ...	LST ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver
378004	69	CTG ...	LWK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
694772	192	CTG ...	LPR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
694888	33	ATG ...	MMM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
698688	51	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
371550	39	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
368308	75	ATG ...	MET ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
694833	219	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
377452	87	ATG ...	MAK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
369314	237	GTG ...	VEE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
951652	162	CTG ...	LGV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
371375	69	TTG ...	LHS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
368779	45	ATG ...	MVQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain
375575	54	TTG ...	LVS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
700289	60	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
953062	72	ATC ...	ILS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
372016	87	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain
950973	39	ATC ...	IQK ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
371222	84	CTG ...	LHF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
953424	54	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
376867	93	ATG ...	MPQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
373762	30	CTG ...	LTP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
377428	168	ATG ...	MET ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
371778	102	TTG ...	LDG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
34878	33	GTG ...	VCL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain
952120	69	ATA ...	IKS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
698071	210	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC
953861	45	ATC ...	ITK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
368612	90	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
953090	84	ATC ...	ITL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
378244	84	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain
371005	90	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
371115	174	GTG ...	VSW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
373991	30	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
374167	51	ATG ...	MLG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
378265	195	TTG ...	LDG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
951991	75	AGG ...	RKI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
368949	87	ATG ...	MGP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
377127	141	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
372508	42	GTG ...	VCS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
951116	255	AGG ...	RSC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
793532	33	CTG ...	LQV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
378156	45	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver

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