Transcript 31094 | MetamORF

Transcript

ID CARD

MetamORF ID

31094

ENSMUST00000023085

Name

Ndufa6-201

Strand

Biotype

protein_coding

Start-end positions

82350139-82354291

CDS Start-stop positions

82350240-82354228

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:67130

Aliases

14kDa,
2700038D15Rik, B230217P19Rik, ENSMUSG00000022450,
MGI:1914380, NCBI:67130, Ndufa6,
OFF:Ndufa6

Chr 15

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1183958	72	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
355749	45	ATG ...	MSQ ...	Ribo-seq	ATG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
366306	291	ATG ...	MLK ...	Ribo-seq	ATG		10	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
851913	30	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1180871	291	ACG ...	TRP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
365346	249	GTG ...	VHL ...	Ribo-seq	GTG		11	sORFs_org_Mouse	CDS sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
31093	30	TTG ...	LVS ...	Ribo-seq	TTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
358115	39	ATG ...	MEA ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC
1855368	75	ATG ...	MKQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	R1E
355242	51	ATG ...	MPM ...	Ribo-seq	ATG		17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
948651	114	AAG ...	KYG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC

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