Transcript 10854 | MetamORF

Transcript

ID CARD

MetamORF ID

10854

ENSMUST00000022782

Name

Lrp10-201

Strand

Biotype

protein_coding

Start-end positions

54464164-54471497

CDS Start-stop positions

54464575-54469849

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:65107

Aliases

ENSMUSG00000022175,
Lrp10, Lrp9, MGI:1929480,
NCBI:65107, OFF:Lrp10

Chr 14

ORFs

103 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
945827	66	ATA ...	IQL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
945231	42	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
345809	165	CTG ...	LSL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
349474	231	ATG ...	MVL ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
679162	42	ATG ...	MAG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF
346421	225	CTG ...	LDP ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
467705	228	GTG ...	VLD ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Spleen_B_cell
351022	39	CTG ...	LGP ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E
945591	300	ATG ...	MER ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
466280	39	CTG ...	LGH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
946815	156	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
349926	102	GTG ...	VAG ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
350152	42	ATG ...	MLG ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Neutrophil, R1E
945982	39	AGG ...	RQR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
945027	267	ATC ...	INS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
946477	186	AGG ...	RSY ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
349612	51	CTG ...	LCW ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, Spleen_B_cell
1307905	102	ACG ...	TPV ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
946283	210	ATG ...	MGS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1709772	93	ATG ...	MRT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
1351646	129	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
349253	111	CTG ...	LQS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
344099	135	CTG ...	LLC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
675737	60	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
945502	33	AAG ...	KHT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
352989	90	CTG ...	LWK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
945420	63	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
945087	54	AGG ...	RRP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
351893	123	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
944630	63	ATA ...	IFT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
946594	147	ATC ...	ISP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
677896	57	GTG ...	VRR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, NSC
346927	249	ATG ...	MQC ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
467923	63	GTG ...	VRP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
343465	39	ATG ...	MQP ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell
785747	105	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
675345	48	CTG ...	LPT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
28857	51	CTG ...	LFT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell, Testis
351455	102	GTG ...	VPS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
787874	123	CTG ...	LGY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14
467775	144	CTG ...	LVR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Spleen_B_cell
29962	42	TTG ...	LGQ ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell, Testis
1350223	60	CTG ...	LWL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
350277	234	ATG ...	MMV ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
677968	45	ATG ...	MMA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF
349608	102	GTG ...	VRP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
350638	87	ATG ...	MLP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
787584	75	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
946181	48	TTG ...	LLL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1450864	168	GTG ...	VDA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
348857	123	CTG ...	LKL ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
947014	84	AAG ...	KTS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
467288	51	CTG ...	LAG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
945211	105	ATA ...	IPQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
946976	135	ATA ...	IQL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
946867	84	ATC ...	IGP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
946315	126	ATG ...	MGS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
946703	42	GTG ...	VPE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
350040	174	ATG ...	MAR ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
946111	162	ACG ...	TPC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
678191	72	GTG ...	VMG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
345143	57	CTG ...	LGR ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
347606	48	ATG ...	MAQ ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain
466789	72	TTG ...	LAT ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
946796	138	AGG ...	RHP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1307013	252	ACG ...	TGS ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
945458	126	CTG ...	LEL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
350730	69	ATG ...	MGL ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
10853	48	TTG ...	LDP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Skin_tumor
350900	60	ATG ...	MPA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain
346639	75	ATG ...	MSG ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell
945578	54	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
945777	243	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
349721	108	CTG ...	LDI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
347127	39	CTG ...	LWK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, NSC, Spleen_B_cell
343899	90	CTG ...	LAL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, R1E
465730	159	CTG ...	LWR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Spleen_B_cell
944783	123	ATC ...	IIT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
344113	132	TTG ...	LCP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
946621	84	ATG ...	MYC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF
467495	240	ATG ...	MCM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Spleen_B_cell
345748	114	TTG ...	LLG ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
343993	51	GTG ...	VPS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, NSC
468844	150	TTG ...	LCS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
350034	30	CTG ...	LWL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Spleen_B_cell
947089	69	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
945900	246	AGG ...	RRH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
467575	234	TTG ...	LVR ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell
946521	180	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
345174	63	ATG ...	MSP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E
350354	39	CTG ...	LQL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell
10952	66	GTG ...	VVP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Skin_tumor
945560	192	TTG ...	LSR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
786168	63	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
786834	60	CTG ...	LGF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
344699	51	CTG ...	LRG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, v6-5
677189	63	TTG ...	LMP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
465824	39	GTG ...	VAW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell
343471	63	GTG ...	VPA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
351485	111	TTG ...	LPR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
679057	42	CTG ...	LCS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, NSC
945182	39	AGG ...	RHP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
350294	84	CTG ...	LLS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Neutrophil

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