Transcript 28707 | MetamORF

Transcript

ID CARD

MetamORF ID

28707

ENSMUST00000022613

Name

Esco2-201

Strand

Biotype

protein_coding

Start-end positions

65819038-65833994

CDS Start-stop positions

65819966-65832728

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:71988

Aliases

2410004I17Rik,
D030072L07Rik, ENSMUSG00000022034, Esco2,
MGI:1919238, NCBI:71988, OFF:Esco2

Chr 14

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1349111	96	TTG ...	LQT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
465494	126	GTG ...	VNL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	Neutrophil, Spleen_B_cell
468379	63	GTG ...	VRY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Spleen_B_cell
29893	111	CTG ...	LAE ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF Upstream	3T3, Neutrophil, Spleen_B_cell, Testis
1309094	33	AAG ...	KKE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1139937	150	ATG ...	MKL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1349986	60	CTG ...	LFP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1138801	171	TTG ...	LAV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
1310140	33	AAG ...	KKE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1139498	102	TTG ...	LFS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
469067	81	GTG ...	VQR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	E14, MEF, Spleen_B_cell
1308481	36	ACG ...	TPV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1350130	78	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1179445	99	ATA ...	ILL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1307623	99	GTG ...	VQR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
468298	69	CTG ...	LRC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
1349240	234	GTG ...	VLK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1140834	33	CTG ...	LWD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1350792	117	CTG ...	LKI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1307330	48	AGG ...	RCS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1140124	66	CTG ...	LEK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
1852530	42	GTG ...	VFR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
1179549	96	AGG ...	RPF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1709549	51	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1351746	87	ATG ...	MIF ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
467968	30	ATG ...	MQE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1140818	33	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1178959	57	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1139290	135	CTG ...	LTQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
1306561	36	TTG ...	LGW ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
28706	72	TTG ...	LLR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell, Testis
1349198	48	TTG ...	LLP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1349358	231	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1139500	33	TTG ...	LWH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1349145	66	ATG ...	MYR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
468680	30	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1710522	30	ATG ...	MSK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1309585	42	TTG ...	LYS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1350081	183	GTG ...	VFK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1307712	156	AAG ...	KLH ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1349137	48	CTG ...	LKN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
29183	90	GTG ...	VSK ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell, Testis
1853844	114	ATG ...	MYR ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
1138998	30	CTG ...	LQH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1139152	69	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1139036	120	ATG ...	MAN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
1350888	54	CTG ...	LPN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
1613028	33	TTG ...	LLH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1306612	57	CTG ...	LYL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1351641	96	TTG ...	LIN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1139599	108	TTG ...	LQP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
1306780	60	AAG ...	KNV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1349672	66	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1179212	114	TTG ...	LQN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
29767	120	TTG ...	LNT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF Upstream	Neutrophil, Spleen_B_cell, Testis
1138738	144	TTG ...	LHF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5

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