Transcript 29987 | MetamORF

Transcript

ID CARD

MetamORF ID

29987

ENSMUST00000022590

Name

Dnajc15-201

Strand

Biotype

protein_coding

Start-end positions

77826217-77874917

CDS Start-stop positions

77826397-77874899

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:66148

Aliases

1110003P16Rik,
Dnajc15, Dnajd1, ENSMUSG00000022013,
MGI:1913398, NCBI:66148, OFF:Dnajc15

Chr 14

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
850448	45	TTG ...	LHL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
351349	102	CTG ...	LFR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, v6-5
30068	177	CTG ...	LHF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	CDS sORF	B_cell, Brain, E14, Neutrophil, R1E, Testis
350150	135	CTG ...	LQC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, Brain
681004	180	ATG ...	MTI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
945398	63	ACG ...	TPN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30440	279	TTG ...	LRS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	CDS sORF	3T3, BMDC, E14, Neutrophil, Testis
946402	84	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
681050	114	TTG ...	LFS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1351032	120	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
787450	54	CTG ...	LPK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
1711254	39	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
679133	42	CTG ...	LPK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, R1E
29986	261	GTG ...	VHG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, Testis, v6-5
675293	42	CTG ...	LAR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
30244	240	TTG ...	LFF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Testis, v6-5
679715	57	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
946841	75	ACG ...	TPN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30381	288	ATG ...	MRG ...	Ribo-seq	ATG		6	sORFs_org_Mouse	CDS sORF	3T3, BMDC, Brain, E14, Neutrophil, Testis
679666	54	TTG ...	LQL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
850269	48	CTG ...	LLH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
678198	45	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
30259	228	GTG ...	VQS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Testis, v6-5
944617	141	ATT ...	ISD ...	Ribo-seq	ATT		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
680137	162	ATG ...	MFS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
945963	75	ATA ...	IPA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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