Transcript 26972 | MetamORF

Transcript

ID CARD

MetamORF ID

26972

ENSMUST00000022242

Name

Emb-201

Strand

Biotype

protein_coding

Start-end positions

117220272-117274415

CDS Start-stop positions

117220849-117273062

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:13723

Aliases

AL022799,
Emb, ENSMUSG00000021728, Gp70,
MGI:95321, NCBI:13723, OFF:Emb

Chr 13

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
334549	45	ATG ...	MSR ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
340482	33	CTG ...	LGK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil
941537	30	ATA ...	ILK ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
334704	102	GTG ...	VYT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Neutrophil
335938	39	TTG ...	LCL ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, v6-5
337947	48	TTG ...	LRL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Neutrophil
1041960	78	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Neutrophil
338685	171	ATG ...	MEG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, Glioma, Liver, MEF, MESC
943726	39	ATT ...	IGL ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
420648	30	ACG ...	TDR ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
26971	69	CTG ...	LAV ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Neutrophil, Spleen_B_cell, Testis, v6-5
340023	126	TTG ...	LTL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil, v6-5
669926	57	ATG ...	MSP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Neutrophil, v6-5
338917	174	TTG ...	LME ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
672368	42	ATG ...	MWN ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
942876	102	ATA ...	ISS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
333917	51	GTG ...	VCM ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, v6-5
670177	39	ATG ...	MED ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
942531	72	ATC ...	ISR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
671343	60	ATG ...	MMS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Neutrophil
669027	93	ATG ...	MVP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Neutrophil, v6-5
337122	111	ATG ...	MKS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil, v6-5
27666	63	GTG ...	VGA ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Neutrophil, Spleen_B_cell, Testis, v6-5
671079	78	ATG ...	MKQ ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Neutrophil, v6-5
670101	147	GTG ...	VSC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1302818	177	AGG ...	RPA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
672826	84	ATG ...	MPM ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Neutrophil, v6-5
27863	81	CTG ...	LSP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, Neutrophil, Spleen_B_cell, Testis, v6-5
941577	51	ATA ...	IAN ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
668656	33	GTG ...	VSC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
337543	132	GTG ...	VEA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, Brain
339804	30	GTG ...	VRS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, v6-5
342474	36	ATG ...	MLG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil
671274	36	GTG ...	VTS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Neutrophil
944182	168	ATT ...	IGL ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
671214	36	TTG ...	LSS ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, v6-5
942714	54	ATC ...	IFW ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
941888	30	ATT ...	ILV ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
672140	36	CTG ...	LVS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
1042043	99	CTG ...	LRC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Neutrophil
1301959	42	ATC ...	ILL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
672892	210	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
942272	123	ACG ...	TLT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

Export data