Transcript 306208

Transcript

ID CARD

MetamORF ID

306208

ENSMUST00000021148

Name

Ube2g1-201

Strand

Biotype

protein_coding

Start-end positions

72607283-72686481

CDS Start-stop positions

72607590-72679455

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:67128

Aliases

2700059C12Rik,
AI256795, AU014992, AW552068,
D130023C12Rik, ENSMUSG00000020794, MGI:1914378,
NCBI:67128, OFF:Ube2g1, Ube2g1

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
304928	63	GTG ...	VVF ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, R1E, v6-5
300905	60	GTG ...	VFL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, R1E, v6-5
302318	75	CTG ...	LGR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
931457	84	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
295789	81	ATG ...	MSL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
448693	291	GTG ...	VRA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Spleen_B_cell
298357	117	TTG ...	LIK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
305238	33	CTG ...	LCK ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
310750	102	CTG ...	LFF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
307797	105	GTG ...	VMF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell, v6-5
303782	108	ATG ...	MVM ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, Spleen_B_cell, v6-5
291904	102	ATG ...	MFA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
447298	57	TTG ...	LSP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
297645	54	ATG ...	MRS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
294539	60	ATG ...	MVM ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
311474	39	CTG ...	LVT ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E, v6-5
291637	90	ATG ...	MYI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
450780	243	CTG ...	LSE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
309844	30	ATG ...	MEG ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, v6-5
446964	198	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Spleen_B_cell
315369	120	ATG ...	MIS ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
641512	69	GTG ...	VKV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, R1E, v6-5
21486	78	GTG ...	VAA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, NSC, R1E, Spleen_B_cell, v6-5
19384	51	GTG ...	VSF ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, v6-5
24047	42	TTG ...	LGS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E, v6-5
1129289	90	TTG ...	LVL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, R1E, v6-5
306207	117	TTG ...	LRN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
1486955	66	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
305434	108	ATG ...	MAL ...	Ribo-seq	ATG	strong	1	Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC

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