Transcript 24920 | MetamORF

Transcript

ID CARD

MetamORF ID

24920

ENSMUST00000020974

Name

Id2-201

Strand

Biotype

protein_coding

Start-end positions

25093801-25096092

CDS Start-stop positions

25095318-25096010

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:15902

Aliases

AI255428,
bHLHb26, C78922, ENSMUSG00000020644,
Id2, Idb2, MGI:96397,
NCBI:15902, OFF:Id2

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1448468	81	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
661815	69	GTG ...	VAA ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Liver, Neutrophil, NSC
940262	174	ATG ...	MDL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	BMDC, Glioma, Liver, MEF, MESC
24919	57	CTG ...	LNS ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
25471	30	ATG ...	MIA ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis, v6-5
939746	45	ATC ...	ITR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
939713	66	ATC ...	IPL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
322300	33	CTG ...	LDR ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC
997454	291	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC
938473	102	ATT ...	ITS ...	Ribo-seq	ATT	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver
938518	135	ATG ...	MIV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
25319	45	CTG ...	LSL ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis
321052	72	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
940354	111	ACG ...	TSS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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