Transcript 24353 | MetamORF

Transcript

ID CARD

MetamORF ID

24353

ENSMUST00000020926

Name

Fam84a-201

Strand

Biotype

protein_coding

Start-end positions

14146830-14152054

CDS Start-stop positions

14149846-14150724

CDS Relative positions

270-1148

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:105005

Aliases

2310003N02Rik,
4731402F03Rik, AW125753, ENSMUSG00000020607,
Fam84a, Lratd1, MGI:2145011,
NCBI:105005, Nse1, OFF:Lratd1

Chr 12

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
321285	96	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
24850	183	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	Brain, Testis
24352	39	CTG ...	LRC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC, Testis
321320	51	ATG ...	MRR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
330351	114	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
323165	69	TTG ...	LPT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
25063	54	GTG ...	VST ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
26268	264	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Testis
25127	183	CTG ...	LRA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
24383	153	GTG ...	VAT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
25475	261	ATG ...	MHL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Testis
24563	240	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	Brain, Testis
24478	111	CTG ...	LGR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
321377	267	CTG ...	LWP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
330185	159	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
330871	66	TTG ...	LGF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain

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