Transcript 9312 | MetamORF

Transcript

ID CARD

MetamORF ID

9312

ENSMUST00000020630

Name

Hspa4-201

Strand

Biotype

protein_coding

Start-end positions

53259814-53300457

CDS Start-stop positions

53261612-53300166

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:15525

Aliases

70kDa,
AI317151, APG-2, ENSMUSG00000020361,
Hsp110, Hsp70RY, Hspa4,
MGI:1342292, mKIAA4025, NCBI:15525,
OFF:Hspa4

Chr 11

ORFs

102 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
934863	99	AGG ...	RLL ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
297903	45	CTG ...	LPI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
645794	33	CTG ...	LKK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1295432	264	ACG ...	TAS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
457134	138	ATG ...	MKL ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
936258	36	AGG ...	RTS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
449519	57	ATG ...	MWY ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
1287148	45	ATC ...	IQL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
448920	84	GTG ...	VRP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Spleen_B_cell
447873	30	TTG ...	LVV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
8791	42	ATG ...	MQM ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, NSC, Spleen_B_cell
309671	30	CTG ...	LYV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
644681	69	TTG ...	LQS ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
937877	39	ATA ...	IEA ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
445701	39	TTG ...	LLM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
456410	72	TTG ...	LRA ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, NSC, Spleen_B_cell
935363	30	AGG ...	RRQ ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
309793	48	CTG ...	LLC ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell
1124196	51	GTG ...	VCN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
22732	243	GTG ...	VRP ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
453360	33	ATG ...	MES ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
1294383	48	ATC ...	IQL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
309336	96	CTG ...	LLS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, Liver, v6-5
1286732	72	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
933307	72	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, v6-5
456344	51	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, R1E, Spleen_B_cell
889426	93	CTG ...	LST ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver, v6-5
453907	39	ATG ...	MKM ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell
457319	81	CTG ...	LRR ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
318821	48	TTG ...	LVL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, v6-5
932355	63	CTG ...	LMA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, v6-5
22576	132	CTG ...	LKS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
294395	42	ATG ...	MTP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1294064	78	AGG ...	RRW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1122238	45	TTG ...	LIQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
930582	162	AGG ...	RNQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
452522	120	ATG ...	MPR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
453887	33	ATG ...	MEK ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell
319462	42	TTG ...	LSR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, v6-5
448354	39	GTG ...	VSA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
1289181	180	AAG ...	KWN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
18787	57	CTG ...	LDQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, Testis
1286977	36	ATA ...	IAS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
889162	60	TTG ...	LWK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
448155	57	CTG ...	LKR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
445656	78	GTG ...	VHS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, NSC, Spleen_B_cell
1293984	270	ACG ...	TCT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
23874	252	GTG ...	VCP ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1296109	135	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
305902	135	GTG ...	VTV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
937794	69	AGA ...	RHL ...	Ribo-seq	AGA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
445624	279	CTG ...	LQP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
453710	108	ATG ...	MLL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
1294741	213	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
772904	81	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
934223	39	AGG ...	RNL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1294572	156	AAG ...	KWT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
446760	48	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell
8422	36	ATG ...	MKL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Spleen_B_cell
311056	147	CTG ...	LSR ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
9311	87	CTG ...	LWT ...	Ribo-seq	CTG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell
888456	30	ATG ...	MIL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
315135	144	ATG ...	MQM ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
312433	114	CTG ...	LGP ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain, Liver, MEF, Spleen_B_cell
311890	84	GTG ...	VQT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver, v6-5
451725	105	GTG ...	VQF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
455329	60	ATG ...	MKQ ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1126171	42	CTG ...	LRW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
22442	216	CTG ...	LKR ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
298756	54	CTG ...	LKI ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, MEF, Spleen_B_cell
454156	84	ATG ...	MGV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, NSC, Spleen_B_cell
8744	108	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
446364	129	GTG ...	VKS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
446088	60	CTG ...	LMW ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
294947	150	ATG ...	MLS ...	Ribo-seq	ATG	moderate	17	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
1293361	129	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
934702	30	ATG ...	MLW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
937163	36	ATC ...	IVQ ...	Ribo-seq	ATC		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1124183	36	TTG ...	LHM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
450791	105	CTG ...	LLL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
454757	132	CTG ...	LSL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
8304	45	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
313878	57	GTG ...	VFL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, R1E, v6-5
448089	135	GTG ...	VQC ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, Brain, Liver, Spleen_B_cell
294334	39	TTG ...	LSR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, v6-5
1295185	90	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
8225	30	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell
294505	138	ATG ...	MDQ ...	Ribo-seq	ATG	strong	15	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
19943	93	GTG ...	VCP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Spleen_B_cell, Testis
1127773	60	ATG ...	MAT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
937996	144	AAG ...	KNH ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
447621	45	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
451308	126	ATG ...	MAK ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1293254	135	ATA ...	ILK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
446887	90	CTG ...	LLS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
936275	75	AAG ...	KYL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1290150	165	AGG ...	RRN ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
22792	207	GTG ...	VRS ...	Ribo-seq	GTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
307274	39	ATG ...	MPH ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC
451927	48	GTG ...	VLY ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
776539	90	CTG ...	LIP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, R1E
641228	54	TTG ...	LRP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain

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