Transcript 7686 | MetamORF

Transcript

ID CARD

MetamORF ID

7686

ENSMUST00000020484

Name

Txnrd1-201

Strand

Biotype

protein_coding

Start-end positions

82859179-82897712

CDS Start-stop positions

82874649-82896045

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:50493

Aliases

ENSMUSG00000020250,
MGI:1354175, NCBI:50493, OFF:Txnrd1,
TR, TR1, TrxR1,
Txnrd1

Chr 10

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
902317	63	AAG ...	KCW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
909492	69	ATA ...	IVS ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
165211	66	ATG ...	MCR ...	Ribo-seq	ATG	moderate	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
916119	33	ACG ...	TPS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
906089	84	ATC ...	ILC ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1283107	129	ATT ...	IQQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1242216	54	AGG ...	RRG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
250782	72	TTG ...	LTR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, v6-5
911572	273	TTG ...	LQR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
214610	45	CTG ...	LGL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
1113115	45	GTG ...	VMI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, v6-5
160192	93	CTG ...	LGE ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1098208	36	GTG ...	VNT ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC, R1E, v6-5
974343	81	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	Liver
519135	36	CTG ...	LET ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, R1E, Spleen_B_cell, v6-5
929376	90	AGG ...	RKR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1281992	87	AAG ...	KRF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
617136	96	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
610240	75	ATG ...	MTM ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
928690	117	ATA ...	ITK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
267045	36	TTG ...	LAI ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, v6-5
1257473	93	ATT ...	IQQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
525789	63	GTG ...	VRD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
550265	57	CTG ...	LYL ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
1283206	132	AGG ...	RRG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
580481	36	ATG ...	MAV ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, v6-5
1283091	213	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
925542	30	AAG ...	KQE ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
240307	69	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
246045	63	ATG ...	MKS ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Spleen_B_cell, v6-5
529573	57	TTG ...	LVH ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
924311	42	ATG ...	MIF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, v6-5
435509	33	CTG ...	LLN ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Neutrophil, NSC, Spleen_B_cell, v6-5
445196	270	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
1326053	30	ATG ...	MLC ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF
559139	42	TTG ...	LNR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, v6-5
433742	45	GTG ...	VSW ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1248126	63	AGG ...	RPT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
929670	192	ACG ...	TGG ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
173932	42	ATG ...	MAP ...	Ribo-seq	ATG	moderate	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1271124	57	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
904073	33	AGG ...	RNV ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
929452	72	CTG ...	LET ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, R1E, v6-5
1258451	39	ATC ...	IHK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
921966	87	ACG ...	TCR ...	Ribo-seq	ACG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
906691	60	AGG ...	RIS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
445385	237	GTG ...	VRD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
1282779	33	AAG ...	KSW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
271914	48	ATG ...	MCL ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, R1E, Spleen_B_cell, v6-5
444436	30	CTG ...	LES ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
7685	78	TTG ...	LYE ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
444846	204	CTG ...	LVV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF, Spleen_B_cell
445041	204	ATG ...	MRM ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
224480	42	ATG ...	MLT ...	Ribo-seq	ATG		12	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1108048	30	GTG ...	VQD ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, v6-5
159941	63	TTG ...	LTK ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
263216	48	ATG ...	MRM ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
620351	54	GTG ...	VHP ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, v6-5
924431	33	AAG ...	KIP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
434320	30	CTG ...	LVV ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
907499	30	AAG ...	KAN ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
908699	36	ACG ...	TGG ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
929529	153	ATA ...	ITK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
604449	81	GTG ...	VTM ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
929668	93	ACG ...	TKK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
927280	60	AAG ...	KSR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
445049	99	GTG ...	VRG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, Spleen_B_cell, v6-5
928526	132	CTG ...	LGE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
568674	45	ATG ...	MSP ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, R1E, v6-5
512464	114	CTG ...	LPG ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
534301	63	GTG ...	VRG ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, NSC, Spleen_B_cell
426914	45	TTG ...	LSH ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell
443596	198	ATG ...	MLT ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5

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