Transcript 6477 | MetamORF

Transcript

ID CARD

MetamORF ID

6477

ENSMUST00000020397

Name

Snrpd3-201

Strand

Biotype

protein_coding

Start-end positions

75517551-75537381

CDS Start-stop positions

75519335-75535322

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:67332

Aliases

1700043E15Rik,
2310009E13Rik, AW046420, ENSMUSG00000020180,
MGI:1914582, NCBI:67332, OFF:Snrpd3,
SMD3, Snrpd3

Chr 10

ORFs

34 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1661081	45	ATG ...	MCI ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
72892	54	GTG ...	VGW ...	Ribo-seq	GTG	strong	15	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
74821	123	CTG ...	LRK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, R1E, Testis, v6-5
1279394	84	ACG ...	TWD ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
1243439	33	AGG ...	RKS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
234437	42	GTG ...	VGT ...	Ribo-seq	GTG	strong	13	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1259488	72	ACG ...	TWE ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
84487	99	GTG ...	VVF ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, C2C12, MEF, R1E, Spleen_B_cell, Testis
1253191	48	ATA ...	IKT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
7607	60	ATG ...	MVE ...	Ribo-seq	ATG	strong	25	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
90129	159	GTG ...	VRV ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
68147	42	GTG ...	VCR ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
1283128	132	AGG ...	RKS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1247890	45	AGG ...	RGR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1256423	93	AGG ...	RER ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
1241020	39	AAG ...	KAQ ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
87285	192	CTG ...	LRK ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
90457	168	GTG ...	VVF ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
6476	60	GTG ...	VRP ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
1283032	144	AGG ...	RGR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
974383	45	ATA ...	IIF ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	Liver, MEF
574335	60	CTG ...	LGA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF Upstream	3T3, MEF, R1E
418347	42	ATA ...	IYT ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12, MEF
915501	99	TTG ...	LSF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
75285	45	TTG ...	LVC ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
418598	48	ATT ...	IAR ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, MEF
66852	90	GTG ...	VRV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, C2C12, MEF, R1E, Spleen_B_cell, Testis
1283201	90	AGA ...	RCP ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
69147	60	CTG ...	LPR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis
88443	57	CTG ...	LQL ...	Ribo-seq	CTG		22	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
68991	39	TTG ...	LCQ ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, R1E, Spleen_B_cell, Testis
418498	30	AAG ...	KSC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
1248116	30	ATA ...	IYV ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1247313	78	ATA ...	IQR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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