Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

7552

ID

ENSMUST00000020315

Name

Cand1-201

Strand

-

Biotype

protein_coding

Start-end positions

119199255-119240055

CDS Start-stop positions

119202981-119239708

CDS Relative positions

-

Sequences

Transcript sequence

AGC ...

Gene

ID

NCBI:71902

Aliases

2310038O07Rik,
6330512O03Rik, AI195005, AI846556,
Cand1, D10Ertd516e, ENSMUSG00000020114,
MGI:1261820, mKIAA0829, NCBI:71902,
OFF:Cand1, Tp120a


Chr 10

ORFs

116 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

522704 45

ATG ...

MRC ...

Ribo-seq
ATG moderate 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
Spleen_B_cell, v6-5
623077 39

GTG ...

VTL ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, R1E
247447 36

ATG ...

MSS ...

Ribo-seq
ATG weak 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    sORF
    Upstream
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
v6-5
1748862 105

ATG ...

MKM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
70009 78

CTG ...

LSQ ...

Ribo-seq
CTG weak 12 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, R1E, Spleen_B_cell,
Testis
1105327 48

CTG ...

LLS ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, NSC,
v6-5
836768 30

TTG ...

LEK ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
Neutrophil, R1E
1269607 72

ACG ...

TCR ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
191278 162

ATG ...

MRC ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC
1247504 30

ATT ...

ILR ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
445167 39

TTG ...

LLS ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, Spleen_B_cell, v6-5
445355 36

TTG ...

LSH ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Spleen_B_cell, v6-5
1280096 57

AGG ...

RPA ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
554951 30

ATG ...

MPG ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
v6-5
80654 198

CTG ...

LAG ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, E14,
MEF, Spleen_B_cell, Testis
174230 165

TTG ...

LMR ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
445253 39

TTG ...

LEN ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
928710 33

AAG ...

KLW ...

Ribo-seq
AAG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
250747 75

ATG ...

MTP ...

Ribo-seq
ATG moderate 12 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, NSC,
R1E, Spleen_B_cell, v6-5
1239407 42

ATC ...

IKY ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
287598 57

GTG ...

VGT ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell,
v6-5
1089576 156

GTG ...

VNS ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
v6-5
1245143 30

ATC ...

IIL ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1281814 33

ATC ...

ICN ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
282854 42

CTG ...

LPW ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, R1E,
Spleen_B_cell, v6-5
1107755 108

ATG ...

MSS ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5
1245593 39

ATC ...

IFT ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
77085 30

CTG ...

LSA ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Testis
286562 33

GTG ...

VTM ...

Ribo-seq
GTG moderate 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
1264309 66

ATT ...

IPQ ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
907845 72

AAG ...

KYP ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
208570 36

TTG ...

LLL ...

Ribo-seq
TTG moderate 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Spleen_B_cell, v6-5
1515670 33

CTG ...

LTQ ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, R1E
1242987 42

CTG ...

LPL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
217668 42

CTG ...

LTR ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell
1090930 36

TTG ...

LLH ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1585384 114

ATG ...

MMK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1101875 36

CTG ...

LKL ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1242248 78

ATA ...

ICT ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
208012 48

ATG ...

MFL ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell
1239680 120

ACG ...

TQF ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
567244 63

CTG ...

LCW ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, v6-5
928902 33

CTG ...

LSI ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, v6-5
250381 144

CTG ...

LTL ...

Ribo-seq
CTG weak 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
1279136 60

ATT ...

ILR ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
290200 117

ATG ...

MIQ ...

Ribo-seq
ATG 11 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
508061 30

TTG ...

LQS ...

Ribo-seq
TTG weak 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
Spleen_B_cell, v6-5
7551 33

CTG ...

LII ...

Ribo-seq
CTG weak 15 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
NSC, R1E, Skin_tumor,
Spleen_B_cell, v6-5
1279185 135

ATC ...

IKK ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
570299 30

TTG ...

LID ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
256171 144

CTG ...

LCG ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Spleen_B_cell
241057 33

GTG ...

VYV ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver
914654 36

ATA ...

ISS ...

Ribo-seq
ATA weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1740734 111

ATG ...

MKM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
90369 66

GTG ...

VQY ...

Ribo-seq
GTG 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
289754 81

ATG ...

MRM ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
158315 30

ATG ...

MLR ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, R1E,
Spleen_B_cell, v6-5
281946 105

TTG ...

LNI ...

Ribo-seq
TTG weak 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
70671 66

GTG ...

VQY ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
213537 81

TTG ...

LET ...

Ribo-seq
TTG strong 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, NSC,
R1E, Spleen_B_cell, v6-5
577675 33

CTG ...

LRK ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
507083 42

CTG ...

LFS ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
R1E, Spleen_B_cell
1276517 69

AGG ...

RVH ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
288059 87

ATG ...

MKM ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
915100 54

AGG ...

RLS ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
158346 42

ATG ...

MSR ...

Ribo-seq
ATG moderate 9 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, R1E, v6-5
1576523 135

ATG ...

MIQ ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
287617 45

ATG ...

MTK ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, Spleen_B_cell, v6-5
207578 63

CTG ...

LIY ...

Ribo-seq
CTG moderate 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
564501 42

ATG ...

MYV ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC
517611 45

CTG ...

LAS ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, MEF,
Neutrophil, Spleen_B_cell
1527212 33

CTG ...

LYW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
170389 57

CTG ...

LHR ...

Ribo-seq
CTG moderate 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
R1E, Spleen_B_cell, v6-5
1113131 33

ATG ...

MCS ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
260775 144

ATG ...

MSS ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, Spleen_B_cell
288434 96

ATG ...

MMK ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
1272155 33

ATA ...

IFS ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
512349 72

GTG ...

VRP ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell, Spleen_B_cell
289328 93

ATG ...

MKM ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, R1E, Spleen_B_cell,
v6-5
917993 132

AGG ...

RSA ...

Ribo-seq
AGG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1257872 33

ATC ...

ISC ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1100915 123

TTG ...

LTQ ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
445027 63

CTG ...

LTV ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
Spleen_B_cell, v6-5
72660 42

GTG ...

VRR ...

Ribo-seq
GTG moderate 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
MEF, R1E, Testis,
v6-5
506556 36

GTG ...

VCG ...

Ribo-seq
GTG weak 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
Spleen_B_cell, v6-5
1264239 36

AAG ...

KPF ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
208049 138

TTG ...

LIK ...

Ribo-seq
TTG moderate 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, NSC, R1E,
Spleen_B_cell, v6-5
1098601 108

TTG ...

LKV ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
R1E, v6-5
1231983 30

ATT ...

IKR ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1259279 108

ATC ...

ILM ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
434357 48

CTG ...

LYG ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, Spleen_B_cell, v6-5
576995 81

GTG ...

VSG ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell
177487 42

CTG ...

LSK ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Spleen_B_cell
591055 30

ATG ...

MRQ ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Glioma, Liver, MEF,
MESC, Neutrophil
1254581 96

AGG ...

RLW ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1271100 39

ATT ...

IKI ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
912573 60

ATT ...

IYQ ...

Ribo-seq
ATT weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1096450 36

GTG ...

VKK ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
250593 69

GTG ...

VWE ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell
1274853 51

ATA ...

IPY ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
269868 33

CTG ...

LLL ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF
202561 39

TTG ...

LLS ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Spleen_B_cell
60994 138

CTG ...

LEA ...

Ribo-seq
CTG strong 11 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
E14, Liver, MEF,
NSC, R1E, Spleen_B_cell,
Testis
576153 48

CTG ...

LLM ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1235116 36

AGG ...

RKA ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
444743 66

ATG ...

MLT ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
Spleen_B_cell, v6-5
435898 102

ATG ...

MFR ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Spleen_B_cell
86008 48

GTG ...

VSV ...

Ribo-seq
GTG moderate 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, R1E, Testis,
v6-5
1102309 42

TTG ...

LIL ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
R1E, v6-5
289858 75

ATG ...

MLW ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, R1E,
Spleen_B_cell, v6-5
561172 75

GTG ...

VGA ...

Ribo-seq
GTG strong 2 sORFs_org_Mouse
    sORF
    Upstream
3T3, B_cell
1256070 150

ATC ...

IAS ...

Ribo-seq
ATC strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
921774 39

ATC ...

ILK ...

Ribo-seq
ATC weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
507556 30

ATG ...

MFF ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, NSC,
Spleen_B_cell
1283294 39

AGG ...

RFP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
75151 36

TTG ...

LSH ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Spleen_B_cell

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5