Transcript 6744 | MetamORF

Transcript

ID CARD

MetamORF ID

6744

ENSMUST00000020286

Name

Ppa1-201

Strand

Biotype

protein_coding

Start-end positions

61648552-61674168

CDS Start-stop positions

61648728-61673850

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:67895

Aliases

2010317E03Rik,
ENSMUSG00000020089, MGI:97831, NCBI:67895,
OFF:Ppa1, Ppa1, Pyp

Chr 10

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1274898	60	ATA ...	IFG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929095	111	AGA ...	RHG ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
977826	30	ATC ...	ICL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1239475	108	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
445353	66	GTG ...	VVT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
1282794	57	AGG ...	RNQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
196858	48	TTG ...	LQL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
289977	81	TTG ...	LHS ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, v6-5
64633	45	GTG ...	VTT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Testis
1249491	105	AGG ...	RGS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
638562	57	TTG ...	LRF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, v6-5
534348	111	TTG ...	LCG ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Liver, Neutrophil, R1E, Spleen_B_cell
876455	60	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1282411	183	AGG ...	RGS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
290609	75	CTG ...	LAA ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
288606	63	GTG ...	VTT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Spleen_B_cell, v6-5
638824	132	ATG ...	MRK ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E
637660	72	ATG ...	MQN ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, v6-5
514817	39	CTG ...	LCS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, Spleen_B_cell
831655	90	ATG ...	MWR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, v6-5
289515	75	ATG ...	MCS ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, v6-5
1282957	138	ATA ...	IFG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1250933	39	ACG ...	TTQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
62651	69	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, Testis
1282559	57	ACG ...	TTQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
578266	39	TTG ...	LRF ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
6743	30	ATG ...	MGK ...	Ribo-seq	ATG		10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
1282983	48	TTG ...	LHE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
437588	117	GTG ...	VWL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, R1E, Spleen_B_cell
1256479	165	ACG ...	TQA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
285297	57	ATG ...	MCS ...	Ribo-seq	ATG		13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
62889	57	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, Testis
71057	60	CTG ...	LGC ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, Liver, Spleen_B_cell
534092	84	GTG ...	VHL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, R1E, Spleen_B_cell
887740	102	ATG ...	MMF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
65533	48	GTG ...	VVT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, Testis
289707	87	GTG ...	VTS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
171983	42	TTG ...	LTL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
444994	168	ATG ...	MWR ...	Ribo-seq	ATG		19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
927096	36	AAG ...	KHP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
508094	45	GTG ...	VWL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, Spleen_B_cell
1282431	126	ACG ...	TAP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
290035	87	ATG ...	MSL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
56101	51	GTG ...	VVV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, Spleen_B_cell

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