Transcript 3389 | MetamORF

Transcript

ID CARD

MetamORF ID

3389

ENSMUST00000020107

Name

Atp2b1-201

Strand

Biotype

protein_coding

Start-end positions

98915152-99026143

CDS Start-stop positions

98968917-99023119

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:67972

Aliases

2810442I22Rik,
Atp2b1, E130111D10Rik, ENSMUSG00000019943,
MGI:104653, NCBI:67972, OFF:Atp2b1,
Pmca1

Chr 10

ORFs

110 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
552064	36	TTG ...	LTA ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, v6-5
1468117	39	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
558125	63	GTG ...	VVK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF
161855	120	ATG ...	MET ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, NSC
252055	93	CTG ...	LGK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
909827	132	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
606005	48	TTG ...	LCS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
914369	126	ATA ...	IFK ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
257012	33	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, v6-5
251928	36	ATG ...	MSV ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
591503	48	ATG ...	MTA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
5822	45	CTG ...	LEQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Skin_tumor, v6-5
236884	81	TTG ...	LSK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
903478	93	ATG ...	MCL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
262652	30	GTG ...	VWF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, v6-5
169985	51	TTG ...	LER ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
194328	60	ATG ...	MLV ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
625075	90	GTG ...	VAP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
1264807	201	CTG ...	LVD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
179453	54	ATG ...	MSS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF
289614	42	ATG ...	MVP ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC
5263	63	ATG ...	MKY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor
1254426	75	ATC ...	IRR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
172218	39	TTG ...	LAG ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
183506	60	ATG ...	MHY ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC
218191	111	TTG ...	LEL ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, NSC
1745826	87	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
190220	96	CTG ...	LCA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
1557972	42	CTG ...	LHH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
164801	99	GTG ...	VEK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
249748	30	TTG ...	LHQ ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC
928483	30	ACG ...	TQL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
289051	66	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
260840	60	TTG ...	LSR ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain
6765	33	CTG ...	LTL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Skin_tumor
290535	72	ATG ...	MCL ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
199238	54	GTG ...	VCL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
928769	69	AAG ...	KIE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
3388	75	GTG ...	VCG ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Skin_tumor, v6-5
585924	36	ATG ...	MVE ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC
209805	129	GTG ...	VHT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
629811	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
206872	78	CTG ...	LGI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Neutrophil
908868	114	ATA ...	ILF ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
244242	33	CTG ...	LVN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
290782	69	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
176088	69	ATG ...	MKS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC
248874	81	CTG ...	LVI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
1527760	66	TTG ...	LKE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
181906	159	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
1267104	39	ATT ...	ILT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
217799	39	TTG ...	LQS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, v6-5
288695	183	TTG ...	LIL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF
604289	123	TTG ...	LRG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
603561	30	GTG ...	VMV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
161830	54	GTG ...	VLM ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
226806	144	CTG ...	LEL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
164599	30	GTG ...	VPC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, v6-5
621581	57	ATG ...	MMS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF
4055	72	ATG ...	MLE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Skin_tumor
242805	36	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, v6-5
245407	48	ATG ...	MAR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
635893	54	GTG ...	VRP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
176955	51	TTG ...	LLP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
262480	123	ATG ...	MME ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, NSC
575441	96	CTG ...	LGS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, v6-5
56774	45	ATG ...	MGQ ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Testis, v6-5
595007	39	TTG ...	LQD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
579426	42	TTG ...	LAK ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
620708	36	TTG ...	LWR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
259012	63	ATG ...	MRM ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC
908148	75	ATA ...	IIL ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
918299	78	ATA ...	IHL ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
590954	66	GTG ...	VDY ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
278701	39	GTG ...	VVF ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, NSC
216044	99	ATG ...	MTT ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain
1281893	54	ATT ...	ILT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1582221	69	GTG ...	VKE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
159733	117	CTG ...	LIL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
188402	135	ATG ...	MWL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
274208	42	ATG ...	MSE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
247834	123	ATG ...	MRK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
264196	105	CTG ...	LEL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14
618015	54	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
263377	78	GTG ...	VII ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
241904	39	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
918209	141	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1258586	66	ATA ...	IMR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
245651	63	CTG ...	LLG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
566607	84	TTG ...	LIS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
617248	33	ATG ...	MEM ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
566827	48	ATG ...	MEV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
1475114	48	TTG ...	LKE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
907479	132	ATC ...	ISR ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1246873	105	ACG ...	TTG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
216204	126	GTG ...	VMR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
243095	30	GTG ...	VNL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
200446	141	ATG ...	MAC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
241842	144	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
630966	54	ATG ...	MSM ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain
190345	138	CTG ...	LMW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
233659	147	TTG ...	LLE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
256307	48	ATG ...	MWY ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, NSC, v6-5
1275280	75	AAG ...	KQL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1662947	84	TTG ...	LGK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
618768	63	ATG ...	MRL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
576300	51	ATG ...	MWV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
911866	126	AAG ...	KKR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
225615	150	GTG ...	VCG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain
919699	69	ATA ...	IPS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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