Transcript 63442 | MetamORF

Transcript

ID CARD

MetamORF ID

63442

ENSMUST00000019128

Name

Hnrnpd-201

Strand

Biotype

protein_coding

Start-end positions

99960598-99978937

CDS Start-stop positions

99962545-99978624

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:11991

Aliases

Auf1,
ENSMUSG00000000568, Hnrnpd, Hnrpd,
MGI:101947, NCBI:11991, OFF:Hnrnpd

Chr 5

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1853	63	CTG ...	LHS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell, Testis
904989	72	ATT ...	ITL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
904760	141	ATT ...	ILF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1238081	57	AGG ...	RQR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1236877	72	AAG ...	KEA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
2134	51	CTG ...	LGH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
521513	30	TTG ...	LCY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
1240840	30	AGG ...	RQS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
977650	171	ATC ...	ISS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Downstream Overlapping sORF	E14, MEF
65804	186	TTG ...	LSR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Spleen_B_cell, Testis
63441	42	GTG ...	VGS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
65906	258	CTG ...	LRE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Spleen_B_cell, Testis
516609	177	GTG ...	VPR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Spleen_B_cell
1236915	36	ATC ...	IHR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1240519	51	ATA ...	IRG ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1242325	135	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
520424	66	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
1237526	42	AGG ...	RQR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
522028	63	CTG ...	LLV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
1236612	96	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
172653	39	ATG ...	MGK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
66813	102	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
1234463	51	AGG ...	REP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
905231	30	ATC ...	IKG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1241873	180	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
64334	90	CTG ...	LRP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell, Testis
1240897	102	AAG ...	KYP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
833831	30	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1238854	36	AGG ...	RAI ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
522751	36	TTG ...	LAL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
517367	144	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	E14, Spleen_B_cell
1238148	165	AGG ...	RRE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
901738	63	ATC ...	ILS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1236573	108	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1237167	87	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
180555	87	GTG ...	VSS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Spleen_B_cell
1234638	123	ATC ...	ISR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
901911	36	ACG ...	TPV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
903848	114	GTG ...	VVM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
568868	42	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
522871	87	GTG ...	VGG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
905288	36	ACG ...	TRA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
905349	180	AAG ...	KRG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1240502	42	AGG ...	RRV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
521878	108	GTG ...	VQP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	E14, Spleen_B_cell

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