Transcript 22487 | MetamORF

Transcript

ID CARD

MetamORF ID

22487

ENSMUST00000018556

Name

Kansl1-201

Strand

Biotype

protein_coding

Start-end positions

104333501-104468861

CDS Start-stop positions

104334978-104425210

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:76719

Aliases

1700081L11Rik,
9430041J06Rik, ENSMUSG00000018412, Kansl1,
MGI:1923969, mKIAA1267, NCBI:76719,
OFF:Kansl1

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1841143	51	ATG ...	MGT ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
298569	39	CTG ...	LTL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	Brain, MEF, v6-5
777148	99	CTG ...	LDA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
307094	69	CTG ...	LLI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF, v6-5
18755	201	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
1601964	63	GTG ...	VGT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
303526	36	ATG ...	MWS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1292292	75	GTG ...	VSK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
91825	210	CTG ...	LDF ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver
298225	51	CTG ...	LPT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
311182	69	ATG ...	MEM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1287568	66	CTG ...	LTW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
24034	279	ATG ...	MPL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, R1E, Spleen_B_cell, Testis, v6-5
1600586	54	ATG ...	MSQ ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
304772	54	TTG ...	LSE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	Brain, MEF, v6-5
18896	180	CTG ...	LRW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
419180	78	ATG ...	MYS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
310156	63	ATG ...	MGC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
22486	294	ATG ...	MYS ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis, v6-5
1290645	84	ATA ...	ILS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF Upstream	E14

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