Transcript 14816 | MetamORF

Transcript

ID CARD

MetamORF ID

14816

ENSMUST00000018470

Name

Ywhab-201

Strand

Biotype

protein_coding

Start-end positions

163994960-164018588

CDS Start-stop positions

164011605-164016725

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:54401

Aliases

1300003C17Rik,
14-3-3b, ENSMUSG00000018326, MGI:1891917,
NCBI:54401, OFF:Ywhab, Ywhab

Chr 2

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104945	54	CTG ...	LPS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
14939	33	CTG ...	LSA ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
48118	30	ATG ...	MKS ...	Ribo-seq	ATG	weak	18	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
15382	42	CTG ...	LSR ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
1211560	57	AGG ...	RGM ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
46802	45	CTG ...	LKL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis
45013	39	CTG ...	LPP ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, Testis
16330	66	CTG ...	LKR ...	Ribo-seq	CTG		22	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
48967	39	TTG ...	LHP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, NSC, Spleen_B_cell, Testis
51672	57	CTG ...	LPS ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1681828	39	TTG ...	LTR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
16550	201	GTG ...	VPA ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
16122	45	CTG ...	LAC ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
1216129	99	AGG ...	RRS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1207703	39	AGG ...	RSE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF Upstream	E14
15716	120	GTG ...	VSS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
50845	81	GTG ...	VSP ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1208891	39	ACG ...	TVA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
107474	42	CTG ...	LRS ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
809957	171	GTG ...	VAR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
970639	66	ACG ...	TQS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
48494	45	ATG ...	MKR ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, Testis, v6-5
47495	69	GTG ...	VSW ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1162279	39	CTG ...	LER ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, v6-5
45505	54	CTG ...	LPL ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, Testis
48727	36	ATG ...	MPP ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
16248	180	GTG ...	VSS ...	Ribo-seq	GTG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
967629	45	AAG ...	KKC ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
15213	141	GTG ...	VPA ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
46178	33	CTG ...	LKR ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
15809	51	GTG ...	VRR ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
44329	60	TTG ...	LKS ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
971743	120	AAG ...	KST ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
15367	30	ATG ...	MRR ...	Ribo-seq	ATG	weak	19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
14815	33	TTG ...	LMR ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
16269	111	GTG ...	VRR ...	Ribo-seq	GTG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
728813	156	GTG ...	VQL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Neutrophil
16128	84	ATG ...	MRR ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
1167668	51	ATG ...	MKE ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
499204	150	CTG ...	LPP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Neutrophil, Spleen_B_cell
808467	174	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
968826	123	ATT ...	IPE ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
966065	63	ACG ...	TQS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1208106	30	ATT ...	ISQ ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
966689	33	AGG ...	RER ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
97050	78	GTG ...	VSP ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
108619	42	ATG ...	MLE ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, v6-5
16497	144	ATG ...	MRR ...	Ribo-seq	ATG		22	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5

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