Transcript 94802 | MetamORF

Transcript

ID CARD

MetamORF ID

94802

ENSMUST00000015017

Name

Surf2-201

Strand

Biotype

protein_coding

Start-end positions

26916367-26920183

CDS Start-stop positions

26916426-26919813

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:20931

Aliases

ENSMUSG00000014873,
MGI:98444, NCBI:20931, OFF:Surf2,
Surf-2, Surf2

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
125682	51	TTG ...	LCP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, v6-5
112108	87	GTG ...	VAA ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF
99462	66	ATG ...	MNS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
96431	48	CTG ...	LRR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF, R1E, Spleen_B_cell
732547	72	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14
106335	30	TTG ...	LHS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
117622	162	ATG ...	MSC ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
103351	153	ATG ...	MKS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
1681600	33	GTG ...	VLS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
113441	147	CTG ...	LAM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, v6-5
117136	36	ATG ...	MGI ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell
1680204	30	TTG ...	LSD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
115602	36	ATG ...	MCL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
110320	30	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
102780	69	GTG ...	VMN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
115815	141	ATG ...	MSC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
125478	168	CTG ...	LAM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, R1E, v6-5
94801	132	GTG ...	VWN ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF
96287	123	ATG ...	MSL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
808847	90	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
110669	117	CTG ...	LPA ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
113981	39	CTG ...	LMC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
107544	30	TTG ...	LCP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC
1726336	48	ATG ...	MAF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
812138	48	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
812426	81	GTG ...	VSE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5

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