Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

97654

ID

ENSMUST00000014499

Name

Anapc1-201

Strand

-

Biotype

protein_coding

Start-end positions

128610104-128687391

CDS Start-stop positions

128612948-128686036

CDS Relative positions

-

Sequences

Transcript sequence

TGG ...

Gene

ID

NCBI:17222

Aliases

2610021O03Rik,
AI047775, AI853536, Anapc1,
Apc1, AW547281, ENSMUSG00000014355,
Mcpr, MGI:103097, NCBI:17222,
OFF:Anapc1, tsg24


Chr 2

ORFs

139 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

729924 42

TTG ...

LLA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
732925 120

CTG ...

LTT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
969729 84

ATA ...

ICK ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
102750 57

TTG ...

LCI ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
118746 183

CTG ...

LTT ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
742786 99

TTG ...

LST ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
111660 42

CTG ...

LLL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
502453 162

ATG ...

MWL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
738781 216

TTG ...

LDC ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
1501456 33

TTG ...

LLN ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
496492 63

CTG ...

LAV ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1161549 54

TTG ...

LAD ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
121296 189

ATG ...

MQL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
728877 123

TTG ...

LAC ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1161583 33

TTG ...

LDR ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1723798 30

CTG ...

LRQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
500504 135

TTG ...

LAC ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
98140 75

CTG ...

LWL ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
815511 93

CTG ...

LSY ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
729867 87

TTG ...

LGL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
729552 126

ATG ...

MQL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
494606 54

TTG ...

LFL ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
729720 138

GTG ...

VRL ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
735512 192

CTG ...

LQS ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
497488 36

CTG ...

LCE ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, Spleen_B_cell
106206 90

ATG ...

MSK ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1163080 36

TTG ...

LFF ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
730456 51

ATG ...

MIS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
496474 114

CTG ...

LIS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
500173 105

GTG ...

VSM ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
105095 51

CTG ...

LIQ ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, Spleen_B_cell
498318 99

GTG ...

VAV ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
113527 63

ATG ...

MRF ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
731399 39

TTG ...

LLR ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
739119 201

GTG ...

VFL ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
497609 33

ATG ...

MCI ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Spleen_B_cell,
v6-5
496303 45

CTG ...

LSL ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
1215006 78

ATA ...

IGD ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
736745 51

TTG ...

LSR ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1501324 39

ATG ...

MFD ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
1170716 81

CTG ...

LTR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
MEF, v6-5
1639908 42

CTG ...

LGV ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
742628 99

ATG ...

MWC ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
810425 69

TTG ...

LAL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
733629 48

CTG ...

LVQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
497996 42

ATG ...

MPT ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
496382 93

ATG ...

MIL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1170636 126

ATG ...

MFG ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
501958 87

TTG ...

LEA ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Spleen_B_cell
501148 126

CTG ...

LIS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
498584 42

TTG ...

LLI ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Spleen_B_cell,
v6-5
499159 45

ATG ...

MLF ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Spleen_B_cell,
v6-5
500806 93

ATG ...

MIL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
499046 54

ATG ...

MCV ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
737439 135

CTG ...

LLS ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
497874 54

TTG ...

LEL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
97653 105

TTG ...

LTC ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
495065 99

CTG ...

LSS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
501927 120

GTG ...

VHS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
501644 111

CTG ...

LSV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
494769 39

CTG ...

LIG ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Spleen_B_cell,
v6-5
1504037 75

CTG ...

LKQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
496459 48

CTG ...

LSC ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
497293 36

TTG ...

LIT ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
500216 156

CTG ...

LGT ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
500854 69

ATG ...

MSS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, Spleen_B_cell
739280 66

CTG ...

LLP ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
497271 48

GTG ...

VCM ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
498762 36

CTG ...

LFQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
728991 204

TTG ...

LVF ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
501743 54

TTG ...

LEL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
737179 132

TTG ...

LEM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
732206 183

TTG ...

LAP ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
501144 117

ATG ...

MCL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1368928 93

GTG ...

VSA ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
118439 60

TTG ...

LKK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
732831 111

ATG ...

MKS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1169457 207

TTG ...

LPF ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
969760 87

ATC ...

IST ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
110344 39

TTG ...

LLI ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
500792 57

GTG ...

VTS ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
117637 201

GTG ...

VRL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
498542 48

ATG ...

MSV ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
492743 48

TTG ...

LHP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell
500623 174

ATG ...

MKS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
1168601 210

TTG ...

LLP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
99837 63

TTG ...

LAL ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, R1E
500120 111

CTG ...

LSS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
1211310 204

CTG ...

LPE ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
501042 63

TTG ...

LHP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
498629 57

TTG ...

LHI ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, Spleen_B_cell,
v6-5
1165401 93

GTG ...

VVQ ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
729976 30

CTG ...

LNS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
124492 195

TTG ...

LEM ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
44762 33

ATG ...

MRN ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    sORF
    Upstream
MEF, Spleen_B_cell, v6-5
499590 78

ATG ...

MRI ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1503456 33

GTG ...

VAE ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
739450 54

CTG ...

LLV ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14
741281 42

ATG ...

MHM ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1367617 39

CTG ...

LRP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
501327 75

GTG ...

VTM ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
496313 51

CTG ...

LEC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
744851 96

TTG ...

LLP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1550134 264

GTG ...

VSS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    CDS
    sORF
Brain
492537 42

CTG ...

LFR ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Spleen_B_cell,
v6-5
111673 33

CTG ...

LLP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
732935 36

ATG ...

MYI ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
501338 36

CTG ...

LCE ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
104318 30

TTG ...

LLN ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, Spleen_B_cell,
v6-5
101226 33

GTG ...

VKL ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, R1E, v6-5
731763 30

GTG ...

VGS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
500185 141

ATG ...

MCE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
494151 48

ATG ...

MML ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, Spleen_B_cell,
v6-5
1169554 87

GTG ...

VKE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
815258 30

CTG ...

LKR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
738035 81

TTG ...

LLF ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
118123 48

CTG ...

LTT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1167079 57

CTG ...

LSL ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
102921 36

ATG ...

MFI ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, NSC,
v6-5
1504612 111

TTG ...

LLI ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC
495235 75

TTG ...

LEA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
967979 33

ATT ...

ISN ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1208367 51

TTG ...

LFR ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1216072 42

ATA ...

ISL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
496997 60

TTG ...

LVR ...

Ribo-seq
TTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell, v6-5
494288 57

GTG ...

VMC ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
496476 105

ATG ...

MCL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1169967 108

ATG ...

MAC ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1164345 45

GTG ...

VEF ...

Ribo-seq
GTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
1168854 96

TTG ...

LND ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
124011 114

CTG ...

LLL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
501601 78

ATG ...

MRI ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
493901 42

GTG ...

VLL ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
500929 63

CTG ...

LEC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
746354 93

CTG ...

LPF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
496401 36

GTG ...

VCA ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
502038 162

GTG ...

VKI ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Spleen_B_cell
1169909 75

ATG ...

MRY ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
738030 195

CTG ...

LLQ ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5