Transcript 169953

Transcript

ID CARD

MetamORF ID

169953

ENSMUST00000013693

Name

Commd8-201

Strand

Biotype

protein_coding

Start-end positions

72156575-72168189

CDS Start-stop positions

72159873-72168144

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

NCBI:27784

Aliases

C77770,
Commd8, D5Buc26e, ENSMUSG00000029213,
MGI:1343485, NCBI:27784, OFF:Commd8

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
186157	81	ATG ...	MFS ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
517054	69	ATG ...	MFS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
169952	96	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	B_cell, Brain
517568	66	GTG ...	VEA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
188862	144	GTG ...	VAE ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
522454	57	ATG ...	MLP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
522108	144	TTG ...	LMA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
185780	42	TTG ...	LAK ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
189322	156	TTG ...	LMA ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
522389	30	TTG ...	LAK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
516447	81	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
521650	57	CTG ...	LWP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
518606	117	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
187473	153	ATG ...	MAS ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
188723	93	CTG ...	LSG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
189617	129	CTG ...	LPT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
188493	264	GTG ...	VTG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, Spleen_B_cell
185570	69	ATG ...	MLP ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
522003	132	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
521581	141	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
833123	195	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
187982	108	GTG ...	VSG ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
516697	96	GTG ...	VSG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell

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