Transcript 42246 | MetamORF

Transcript

ID CARD

MetamORF ID

42246

ENSMUST00000007482

Name

Mrpl49-201

Strand

Biotype

protein_coding

Start-end positions

6053630-6057751

CDS Start-stop positions

6054836-6057736

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:18120

Aliases

ENSMUSG00000007338,
L49mt, MGI:108180, MRP-L49,
Mrpl49, NCBI:18120, Nof1,
OFF:Mrpl49

Chr 19

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
490332	39	CTG ...	LST ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, NSC, R1E, Spleen_B_cell, v6-5
487484	48	ATG ...	MSN ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
724214	30	GTG ...	VVG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
723914	117	CTG ...	LWM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
401456	51	TTG ...	LMS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
725531	225	CTG ...	LIT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
1201191	138	ATA ...	ITP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
722506	141	CTG ...	LIT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
409340	114	GTG ...	VVG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, R1E, Spleen_B_cell, v6-5
726631	210	TTG ...	LWS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
408978	201	CTG ...	LWM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, v6-5
42245	69	TTG ...	LFV ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
411018	195	ATG ...	MNT ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1363962	99	TTG ...	LWS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E
1205017	222	ATA ...	ITP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
725643	258	TTG ...	LFC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
723395	126	TTG ...	LWS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
718357	111	ATG ...	MNT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
408880	183	TTG ...	LWS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, v6-5

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