Transcript 45663 | MetamORF

Transcript

ID CARD

MetamORF ID

45663

ENSMUST00000002808

Name

Prkra-201

Strand

Biotype

protein_coding

Start-end positions

76629898-76648015

CDS Start-stop positions

76630411-76647856

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:23992

Aliases

AV120107,
ENSMUSG00000002731, lear, MGI:1344375,
NCBI:23992, OFF:Prkra, Pact,
PRK, Prkra, RAX

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1209571	30	AGG ...	RED ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
45662	33	CTG ...	LIH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Testis
730208	45	CTG ...	LAD ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF
1503183	42	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1504717	60	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
728277	57	CTG ...	LRN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
1504159	57	CTG ...	LRN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
736049	42	CTG ...	LGK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
741863	183	CTG ...	LNI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1546725	78	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1216494	72	ATA ...	IAG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
729333	60	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
736363	54	GTG ...	VKV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1209554	297	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
730162	36	GTG ...	VER ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF
729389	63	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
741964	60	GTG ...	VPR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
744631	111	TTG ...	LIA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14
1216033	219	CTG ...	LEG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
744978	102	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain
743947	63	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC

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