Transcript 11378 | MetamORF

Transcript

ID CARD

MetamORF ID

11378

ENSMUST00000001809

Name

Pabpc1-201

Strand

Biotype

protein_coding

Start-end positions

36595661-36608973

CDS Start-stop positions

36596563-36608506

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:18458

Aliases

ENSMUSG00000022283,
ePAB, MGI:1349722, NCBI:18458,
OFF:Pabpc1, PABP, Pabp1,
Pabpc1, PabpI, Pabpl1

Chr 15

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
470547	51	CTG ...	LRV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
949435	123	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1675736	87	ATG ...	MFT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1538927	87	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
685744	45	GTG ...	VLS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
949051	63	TTG ...	LMM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, v6-5
11800	81	ATG ...	MEN ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
11984	81	ATG ...	MFT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
11484	63	TTG ...	LDE ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
421386	159	ACG ...	TAV ...	Ribo-seq	ACG	moderate	3	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, C2C12, E14
1676159	30	TTG ...	LKG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
11554	96	ATG ...	MGR ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis, v6-5
1142889	57	ATG ...	MSV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
11852	153	TTG ...	LDD ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Skin_tumor
1620069	42	TTG ...	LKG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
948747	69	AGG ...	RRC ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1494318	117	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, NSC
470946	75	TTG ...	LMT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, NSC, v6-5
950171	69	ACG ...	TGL ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
421447	129	ATT ...	IKK ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	sORF Upstream	C2C12, E14
950358	63	TTG ...	LMM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, NSC
11904	147	TTG ...	LDD ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Skin_tumor
421523	72	ATG ...	MTG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, MEF, Neutrophil, NSC, v6-5
472356	30	GTG ...	VIH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
11679	57	ATG ...	MDL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Skin_tumor
11931	150	TTG ...	LLD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
473346	75	TTG ...	LMT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, NSC, R1E, Spleen_B_cell, v6-5
469750	129	GTG ...	VKQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Spleen_B_cell
949478	90	ATC ...	ISE ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
688026	96	TTG ...	LKK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
949387	78	ACG ...	TRS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1539304	129	ATG ...	MIR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
469802	54	GTG ...	VLR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
31367	225	CTG ...	LRP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF, Spleen_B_cell, Testis
1539232	78	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1143575	60	ATG ...	MMS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC, v6-5
472999	72	ATG ...	MTG ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
11677	78	ATG ...	MKM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Skin_tumor
11460	156	TTG ...	LLD ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil, Skin_tumor
355975	36	ATG ...	MKV ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, v6-5
1700688	51	TTG ...	LYT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
949216	63	AGG ...	RAS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
789921	72	ATG ...	MAP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
11377	81	GTG ...	VMK ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Skin_tumor
11547	72	CTG ...	LQG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Skin_tumor, Spleen_B_cell, Testis
1043946	30	GTG ...	VEN ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Neutrophil, NSC, v6-5
421492	108	ATC ...	IQK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
11589	66	ATG ...	MLD ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5

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