Transcript 13165 | MetamORF

Transcript

ID CARD

MetamORF ID

13165

ENSMUST00000001566

Name

Tubb5-201

Strand

Biotype

protein_coding

Start-end positions

35833921-35838306

CDS Start-stop positions

35834982-35838053

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:22154

Aliases

AA408537,
AI596182, B130022C14Rik, ENSMUSG00000001525,
M(beta)5, MGI:107812, NCBI:22154,
OFF:Tubb5, Tubb5

Chr 17

ORFs

91 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
37414	204	ATG ...	MSR ...	Ribo-seq	ATG	moderate	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
36531	30	ATG ...	MSL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Spleen_B_cell, Testis
1190878	39	AGG ...	RRR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
36365	39	GTG ...	VAS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
38681	123	ATG ...	MAS ...	Ribo-seq	ATG		23	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
955589	123	AGG ...	RSS ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
385870	144	TTG ...	LET ...	Ribo-seq	TTG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
37629	99	TTG ...	LRT ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
955678	30	ATC ...	IKN ...	Ribo-seq	ATC	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF
38023	159	ATG ...	MLT ...	Ribo-seq	ATG	weak	17	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
37546	75	GTG ...	VEA ...	Ribo-seq	GTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1193520	63	AGG ...	RPS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
36905	72	GTG ...	VEA ...	Ribo-seq	GTG	strong	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
411072	57	ATT ...	IFF ...	Ribo-seq	ATT	weak	3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, MEF
37137	102	CTG ...	LSS ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
382354	114	ATG ...	MNM ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell
37254	87	ATG ...	MRP ...	Ribo-seq	ATG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1195959	54	ATA ...	IMK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
387530	45	CTG ...	LCL ...	Ribo-seq	CTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
954389	54	ACG ...	TTS ...	Ribo-seq	ACG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
422138	78	ATT ...	IIS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
411223	81	AAG ...	KKK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF Upstream	C2C12
382956	36	ATG ...	MDP ...	Ribo-seq	ATG	strong	12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell
13164	198	CTG ...	LGL ...	Ribo-seq	CTG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
706207	39	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
479260	78	GTG ...	VTA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
422103	39	AGG ...	RPD ...	Ribo-seq	AGG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14, MEF
382436	48	GTG ...	VRA ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
1194267	183	ATA ...	IPS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
38236	90	TTG ...	LPL ...	Ribo-seq	TTG	moderate	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
36803	156	CTG ...	LTF ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
39057	129	ATG ...	MNM ...	Ribo-seq	ATG		21	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
956116	66	ACG ...	TRP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
955600	75	ATT ...	ISV ...	Ribo-seq	ATT	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF
956007	39	ATT ...	IGT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1194697	48	AAG ...	KPQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1193255	87	ATT ...	IPT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
956905	60	AGG ...	RHW ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
36416	123	CTG ...	LGQ ...	Ribo-seq	CTG	strong	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, Testis
13265	156	TTG ...	LNS ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
39252	93	GTG ...	VTA ...	Ribo-seq	GTG		20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
36423	150	CTG ...	LIP ...	Ribo-seq	CTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
380805	54	TTG ...	LFG ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, C2C12, E14, MEF
38212	114	CTG ...	LSI ...	Ribo-seq	CTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
36763	171	GTG ...	VAS ...	Ribo-seq	GTG	moderate	20	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
384425	60	CTG ...	LAW ...	Ribo-seq	CTG	strong	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
13099	78	CTG ...	LGL ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell, Testis
380320	144	TTG ...	LHL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, MEF, Spleen_B_cell
1192563	84	AGG ...	REL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
422149	237	ATA ...	IAA ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
383621	33	TTG ...	LPP ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1190454	156	AAG ...	KCL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
37764	96	TTG ...	LEP ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, MEF, Spleen_B_cell, Testis
976237	54	ATA ...	IRV ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
954441	81	ACG ...	TVT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
38783	63	CTG ...	LCT ...	Ribo-seq	CTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
36115	192	CTG ...	LSV ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
956203	48	AGG ...	RSF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
383834	111	CTG ...	LLP ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
379485	54	ATG ...	MWC ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
379345	45	TTG ...	LAR ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell
36238	186	GTG ...	VTS ...	Ribo-seq	GTG	weak	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
955089	108	ATC ...	ISW ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
481889	78	CTG ...	LRP ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell
37812	126	ATG ...	MPP ...	Ribo-seq	ATG	moderate	19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
37219	66	CTG ...	LAL ...	Ribo-seq	CTG	strong	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
387356	69	TTG ...	LTL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell
388711	174	CTG ...	LPL ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
955260	78	AAG ...	KRK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
36208	213	GTG ...	VLA ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, NSC, R1E, Spleen_B_cell, Testis
382265	156	CTG ...	LRS ...	Ribo-seq	CTG	weak	16	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
38407	267	ATG ...	MSR ...	Ribo-seq	ATG	weak	17	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
39442	165	TTG ...	LAR ...	Ribo-seq	TTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
386966	78	CTG ...	LSW ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell
38146	99	TTG ...	LPA ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
422302	123	ACG ...	TTS ...	Ribo-seq	ACG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, C2C12, E14
382140	39	CTG ...	LNL ...	Ribo-seq	CTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
36572	111	CTG ...	LST ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Testis, v6-5
37857	138	CTG ...	LST ...	Ribo-seq	CTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
411250	48	AGG ...	RPD ...	Ribo-seq	AGG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14, MEF
379950	141	CTG ...	LHR ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
955404	69	AGG ...	RIS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
704944	42	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
379419	63	CTG ...	LSW ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell
385320	96	CTG ...	LRP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell
37884	90	ATG ...	MPP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, Testis, v6-5
976210	33	AAG ...	KPA ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
39175	51	ATG ...	MKP ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
38296	174	GTG ...	VWC ...	Ribo-seq	GTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
38575	96	CTG ...	LAL ...	Ribo-seq	CTG	moderate	19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
383225	108	ATG ...	MAS ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Spleen_B_cell

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