Transcript 5913 | MetamORF

Transcript

ID CARD

MetamORF ID

5913

ENSMUST00000215345

Name

Dync1li1-202

Strand

Biotype

retained_intron

Start-end positions

114688790-114706671

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:235661

Aliases

1110053F02Rik,
Dnclic1, Dync1li1, ENSMUSG00000032435,
LIC-1, MGI:2135610, NCBI:235661,
OFF:Dync1li1

Chr 9

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1273683	216	AAG ...	KTS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
262074	75	CTG ...	LHP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
759675	39	CTG ...	LLW ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	B_cell, E14, MEF, Neutrophil, R1E, v6-5
622195	198	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
255314	78	TTG ...	LDC ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, v6-5
6400	201	CTG ...	LDA ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
265420	57	ATG ...	MEI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, R1E, v6-5
268444	33	GTG ...	VKM ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, R1E, v6-5
267322	51	ATG ...	MGK ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, v6-5
437324	42	ATG ...	MCT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
5912	132	TTG ...	LDS ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, R1E, Skin_tumor, v6-5
257207	141	GTG ...	VGR ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
258754	144	GTG ...	VIP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, R1E
6483	105	GTG ...	VVR ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor, v6-5
258054	63	TTG ...	LLI ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, R1E, v6-5
921366	153	AGG ...	RSG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1269944	30	ATT ...	IPY ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
616062	201	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	B_cell
6229	102	GTG ...	VRE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	R1E, Skin_tumor, v6-5
6283	165	TTG ...	LVV ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
6465	174	CTG ...	LVM ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
261158	96	ATG ...	MDL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, R1E, v6-5
269412	60	TTG ...	LIC ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, v6-5
5925	186	CTG ...	LRD ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
6623	231	CTG ...	LYH ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5

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