Transcript 298140

Transcript

ID CARD

MetamORF ID

298140

ENSMUST00000102575

Name

Dvl2-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

70000617-70012301

CDS Start-stop positions

70000833-70009592

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

NCBI:13543

Aliases

Dvl2,
ENSMUSG00000020888, MGI:106613, NCBI:13543,
OFF:Dvl2

Chr 11

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1291644	219	AGG ...	RIP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
641981	45	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
650795	30	CTG ...	LAW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
649194	207	CTG ...	LSP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
1286551	114	ATC ...	ISP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	NMD sORF Upstream	E14
1285760	234	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
642037	165	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
651118	84	GTG ...	VPP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	CDS NMD sORF	3T3
419510	150	ATT ...	IYH ...	Ribo-seq	ATT		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	C2C12, E14
651269	42	ATG ...	MEP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
650421	189	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
647764	57	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
646929	69	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
646437	48	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1288739	141	GTG ...	VGS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
648136	147	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1292154	231	GTG ...	VDW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1287784	210	CTG ...	LND ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1292850	36	ACG ...	TSS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
1291635	222	CTG ...	LYH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
646545	30	ATG ...	MGA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
644996	240	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
653708	54	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	3T3
641456	141	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	3T3, E14
1292424	45	AGG ...	RTS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
20697	105	TTG ...	LGG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3
647303	72	CTG ...	LTA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	3T3, E14
648764	93	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	CDS NMD sORF	3T3
451741	93	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3
659438	225	ATG ...	MTM ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
650370	249	ATG ...	MGG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
644099	114	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
653001	105	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	3T3, E14
648218	72	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1287210	117	AGG ...	RRD ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
642865	45	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
650858	120	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1292545	108	ATC ...	IPV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
653130	114	TTG ...	LRV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, E14
651421	141	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
650934	90	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
643303	60	CTG ...	LGS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
20114	42	TTG ...	LGT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	3T3
1290414	252	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
17924	33	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
649385	39	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
1293076	93	ATC ...	ILL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
22095	108	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, E14
1291586	183	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
645432	81	ATG ...	MWW ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
645414	51	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
651639	57	CTG ...	LLA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	3T3, E14
1292285	243	ACG ...	TVP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
21234	30	CTG ...	LRD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
649585	66	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
649673	111	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1291946	159	ACG ...	TKV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
646755	108	GTG ...	VCA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3
646881	126	GTG ...	VQP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	3T3
1290952	33	ATC ...	IWM ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
653592	117	CTG ...	LVK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3
651326	267	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3
644706	222	CTG ...	LRN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
644551	60	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3

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