Transcript 47538 | MetamORF

Transcript

ID CARD

MetamORF ID

47538

ENSMUST00000051605

Name

Dut-201

Strand

Biotype

protein_coding

Start-end positions

125247482-125258608

CDS Start-stop positions

125247748-125257413

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:110074

Aliases

5031412I06Rik,
5133400F09Rik, D2Bwg0749e, Dut,
Dutp, dUTPase, ENSMUSG00000027203,
MGI:1346051, NCBI:110074, OFF:Dut

Chr 2

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49269	45	GTG ...	VPM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Neutrophil, R1E, Spleen_B_cell
118655	153	CTG ...	LLG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell
45815	51	TTG ...	LGS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell
1725949	45	CTG ...	LEV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF, R1E
122102	66	CTG ...	LPA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell
1640036	57	ATG ...	MQE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1161072	102	ATG ...	MTP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, R1E
1548734	228	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
49558	135	ATG ...	MAL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, R1E, Spleen_B_cell
1642760	138	CTG ...	LFQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
112163	30	TTG ...	LGK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
1723096	57	TTG ...	LRS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1723602	39	CTG ...	LHC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
47537	51	GTG ...	VIG ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
109368	39	ATG ...	MII ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell
492858	42	TTG ...	LRS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Spleen_B_cell
1642182	102	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
496120	30	CTG ...	LSL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell
50939	45	TTG ...	LGS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, R1E, Spleen_B_cell
732480	36	GTG ...	VGS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
1723227	48	TTG ...	LLE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	MEF, R1E

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