Transcript 3914 | MetamORF

Transcript

ID CARD

MetamORF ID

3914

ENSMUST00000020118

Name

Dusp6-201

Strand

Biotype

protein_coding

Start-end positions

99263231-99267488

CDS Start-stop positions

99263692-99266299

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:67603

Aliases

1300019I03Rik,
Dusp6, ENSMUSG00000019960, MGI:1914853,
MKP-3, MKP3, NCBI:67603,
OFF:Dusp6, PYST1

Chr 10

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
531836	60	GTG ...	VPR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, NSC, R1E, Spleen_B_cell
444923	36	CTG ...	LPG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, R1E, Spleen_B_cell
510478	54	CTG ...	LVQ ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
886936	132	CTG ...	LMA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, R1E
3913	51	CTG ...	LPT ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
262086	144	GTG ...	VQR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E
1090156	96	TTG ...	LLG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC, v6-5
1028492	114	CTG ...	LWC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, NSC, R1E, v6-5
555029	180	CTG ...	LQL ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, MEF, NSC, R1E, v6-5
911155	90	ATT ...	IQR ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
1087916	81	GTG ...	VQQ ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
272550	102	CTG ...	LGT ...	Ribo-seq	CTG	strong	14	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1259434	54	AGG ...	RTR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1238483	66	ATC ...	IRR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
626230	174	TTG ...	LSL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, v6-5
1274327	51	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
550809	93	ATG ...	MRA ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
516906	36	TTG ...	LDP ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1087708	105	CTG ...	LRD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
7484	117	CTG ...	LQD ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, v6-5
3989	102	GTG ...	VAQ ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
1270619	72	ATT ...	IDS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
627787	54	GTG ...	VAS ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, R1E, v6-5
588029	207	TTG ...	LTR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
6364	69	CTG ...	LRG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Skin_tumor
1254151	36	ACG ...	TCW ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
920074	123	ATT ...	IHW ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
523423	51	GTG ...	VQR ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Liver, MEF, NSC, R1E, Spleen_B_cell
879467	129	ATG ...	MAA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E
1101827	93	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, R1E, v6-5
258406	51	CTG ...	LGR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF, Neutrophil, v6-5
613421	168	CTG ...	LTL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, v6-5
635986	126	ATG ...	MSP ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
567331	63	TTG ...	LNN ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF, Neutrophil, NSC
617473	99	TTG ...	LRM ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, v6-5
1268104	81	ACG ...	TES ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1243531	69	ACG ...	TAS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
514029	132	TTG ...	LDF ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
623788	162	TTG ...	LTE ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, v6-5
1093290	87	GTG ...	VQP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
1826436	72	ATG ...	MKP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, R1E
1312000	33	CTG ...	LEP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
5330	39	CTG ...	LRH ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, R1E, Skin_tumor
1259003	123	AGG ...	RQK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
625800	195	GTG ...	VIW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1246547	102	ATA ...	IRS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
627698	168	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3

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