Transcript 8410 | MetamORF

Transcript

ID CARD

MetamORF ID

8410

ENSMUST00000018792

Name

Dusp14-201

Strand

Biotype

protein_coding

Start-end positions

84048041-84068801

CDS Start-stop positions

84048617-84049213

CDS Relative positions

399-995

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:56405

Aliases

1110014C10Rik,
2310042C07Rik, D11Ertd395e, Dusp14,
ENSMUSG00000018648, MGI:1927168, MKP-L,
Mkp6, NCBI:56405, OFF:Dusp14

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1597842	108	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
8517	54	ATG ...	MPP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
303165	81	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
774872	48	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
418804	84	CTG ...	LIC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
1604090	126	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
8409	54	CTG ...	LEA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
1602912	186	TTG ...	LPL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
8700	33	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor

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