Transcript 392749

Transcript

ID CARD

MetamORF ID

392749

ENSMUST00000115832

Name

Dtna-202

Strand

Biotype

protein_coding

Start-end positions

23415442-23659715

CDS Start-stop positions

23535163-23653346

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:13527

Aliases

2210407P21Rik,
a-DB-1, adbn, Dtn,
DTN-A, Dtna, ENSMUSG00000024302,
Gm19389, MGI:106039, NCBI:13527,
OFF:Dtna

Chr 18

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1678559	36	ATG ...	MNV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	Glioma, Liver, MEF, MESC
393041	54	GTG ...	VTC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
397634	54	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
395070	90	GTG ...	VKQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
396401	75	CTG ...	LWI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
394504	36	CTG ...	LES ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
397085	39	ATG ...	MQA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
400503	66	ATG ...	MQA ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
400042	48	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1678611	30	GTG ...	VIA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF
39789	39	ATG ...	MPQ ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
397705	75	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
397315	63	TTG ...	LKI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
392748	99	TTG ...	LEA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1197575	57	ATA ...	IVE ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
393430	39	TTG ...	LRV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
393325	84	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
715644	48	ATG ...	MIS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, Glioma, Liver, MEF, MESC
394358	45	TTG ...	LRI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
715989	33	GTG ...	VDA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
716259	54	TTG ...	LVM ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
716151	36	ATG ...	MQE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC

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