Transcript 39621 | MetamORF

Transcript

ID CARD

MetamORF ID

39621

ENSMUST00000195765

Name

Dtl-206

Strand

Biotype

processed_transcript

Start-end positions

191539105-191575514

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:76843

Aliases

2810047L02Rik,
5730564G15Rik, Dtl, ENSMUSG00000037474,
L2dtl, MGI:1924093, NCBI:76843,
OFF:Dtl, Ramp

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
643508	45	CTG ...	LRQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
463764	57	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
46468	102	GTG ...	VVT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, R1E, Testis, v6-5
682227	81	CTG ...	LAQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
1298543	96	ATC ...	IKS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
712088	51	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
459458	132	GTG ...	VEG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
465755	30	ATG ...	MLA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
216262	39	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1256374	33	CTG ...	LKA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
704923	84	GTG ...	VLA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
39620	108	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1126734	105	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
635933	198	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
1217250	138	ATC ...	ISA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1309805	72	AAG ...	KIC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
715342	192	TTG ...	LTA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1179180	30	ATT ...	IQK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
471314	48	CTG ...	LWT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
725336	90	CTG ...	LKV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
668019	63	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
706490	204	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3

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