Transcript 1085334

Transcript

ID CARD

MetamORF ID

1085334

ENSMUST00000195650

Name

Dtl-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

191537356-191575521

CDS Start-stop positions

191565337-191575400

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:76843

Aliases

2810047L02Rik,
5730564G15Rik, Dtl, ENSMUSG00000037474,
L2dtl, MGI:1924093, NCBI:76843,
OFF:Dtl, Ramp

Chr 1

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
682227	81	CTG ...	LAQ ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
1606691	42	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
462409	84	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1146214	69	CTG ...	LGH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E, v6-5
1141039	45	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1595656	30	CTG ...	LNT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1151614	54	CTG ...	LCL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1151657	30	GTG ...	VCE ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E, v6-5
1151171	96	ATG ...	MGF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, v6-5
1627538	66	TTG ...	LSD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
1148921	39	TTG ...	LFR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1128623	57	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
463764	57	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, v6-5
704923	84	GTG ...	VLA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
471314	48	CTG ...	LWT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1360506	39	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1355928	45	CTG ...	LYP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
684728	30	GTG ...	VMK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1149594	30	GTG ...	VDG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1346559	54	CTG ...	LGD ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E
1362644	42	GTG ...	VCW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E
644011	78	ATG ...	MKK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1137425	75	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, R1E, v6-5
725336	90	CTG ...	LKV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
1539500	39	TTG ...	LTW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
702007	39	GTG ...	VVQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1135149	33	CTG ...	LWS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1617785	30	TTG ...	LQP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1126142	72	CTG ...	LFC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
1111137	45	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1085333	45	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
216262	39	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
665002	72	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
668019	63	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1256374	33	CTG ...	LKA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
695151	87	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
1126734	105	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1544452	48	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
723172	51	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E
1354302	159	TTG ...	LYS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
649467	72	GTG ...	VEK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1540158	45	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
1145026	39	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	v6-5
1126911	54	CTG ...	LSG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1158721	60	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
1149899	147	CTG ...	LCR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, v6-5
465739	57	GTG ...	VVF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5
712088	51	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1148213	30	ATG ...	MDT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, v6-5
1139880	99	TTG ...	LRK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, v6-5
39620	108	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E

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