Transcript 19057 | MetamORF

Transcript

ID CARD

MetamORF ID

19057

ENSMUST00000166162

Name

Drg1-207

Strand

Biotype

processed_transcript

Start-end positions

3256543-3266392

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:13494

Aliases

AA408859,
AI132520, DRG-1, Drg1,
ENSMUSG00000020457, MGI:1343297, NCBI:13494,
NEDD-3, Nedd3, OFF:Drg1

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
775372	42	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1080320	120	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1596871	36	TTG ...	LKM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF
291743	36	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil, NSC
652719	45	TTG ...	LGL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC
454309	39	CTG ...	LVS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil, NSC
648032	75	TTG ...	LMW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
291831	60	CTG ...	LID ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, MEF, v6-5
653119	54	ATG ...	MLE ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC, v6-5
640807	39	TTG ...	LWV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC
20052	33	CTG ...	LKW ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, Testis, v6-5
641060	57	GTG ...	VML ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC, v6-5
19475	297	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
652064	72	ATG ...	MWP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, v6-5
20932	87	CTG ...	LLK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, Liver, Testis, v6-5
649847	102	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
20524	264	GTG ...	VGF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
19056	81	TTG ...	LLN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis

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