Transcript 31643 | MetamORF

Transcript

ID CARD

MetamORF ID

31643

ENSMUST00000146323

Name

Dnajc21-203

Strand

Biotype

retained_intron

Start-end positions

10446766-10449992

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:78244

Aliases

4930461P20Rik,
9930116P15Rik, Dnajc21, ENSMUSG00000044224,
MGI:1925371, NCBI:78244, OFF:Dnajc21

Chr 15

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
357800	39	GTG ...	VNF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
1854548	66	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1182828	33	ATG ...	MQE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1855108	57	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1183702	129	ATT ...	IAP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1183465	102	ATA ...	IGP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1180902	90	ATG ...	MTI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
1183442	69	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1183307	117	AAG ...	KTK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
469993	48	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
31642	105	CTG ...	LFD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, Testis
472054	78	ATG ...	MKM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
1182735	48	AGG ...	RKE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
789037	30	CTG ...	LYY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
1182504	39	CTG ...	LVM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1856472	72	ATG ...	MEL ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
1856144	93	TTG ...	LMT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1183879	33	AGG ...	RNK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1183660	45	AGG ...	RLL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1180866	72	AAG ...	KKT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1180149	63	AAG ...	KKE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14

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