Transcript 55657 | MetamORF

Transcript

ID CARD

MetamORF ID

55657

ENSMUST00000135582

Name

Dmap1-206

Strand

Biotype

processed_transcript

Start-end positions

117674681-117682253

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:66233

Aliases

1500016M21Rik,
Dmap1, Dmtap1, DNMAP1,
DNMTAP1, ENSMUSG00000009640, MGI:1913483,
mKIAA1425, NCBI:66233, OFF:Dmap1

Chr 4

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1225481	30	ATC ...	IGM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
60703	201	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
1227713	153	ATT ...	IEA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
57412	147	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
1229374	42	ATT ...	ILS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
58753	171	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
61271	141	GTG ...	VSE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, Testis
58702	267	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
58924	180	GTG ...	VQV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
59495	162	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Testis
59212	174	GTG ...	VPV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
58321	195	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
55656	300	GTG ...	VHM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
145741	102	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
824795	111	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
555867	150	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
56150	189	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
60327	216	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
58492	270	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
61091	120	CTG ...	LDP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
59798	87	GTG ...	VGA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
57837	174	GTG ...	VLG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
58716	210	CTG ...	LRH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
546917	75	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
156874	72	CTG ...	LRF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
56104	114	GTG ...	VSE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
60504	297	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E
56099	159	GTG ...	VKA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
547566	63	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
58302	93	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
57093	168	GTG ...	VYS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
823103	87	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
56546	192	CTG ...	LPS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
57257	192	GTG ...	VAE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
56171	282	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
60361	294	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E
58573	147	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver, Testis
550826	69	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
154813	63	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
60608	174	GTG ...	VGP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
61065	237	CTG ...	LRH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Testis
60636	198	CTG ...	LGA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis

Export data