Transcript 9791 | MetamORF

Transcript

ID CARD

MetamORF ID

9791

ENSMUST00000053811

Name

Dlst-201

Strand

Biotype

protein_coding

Start-end positions

85110833-85134088

CDS Start-stop positions

85110897-85132753

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:78920

Aliases

1600017E01Rik,
4632413C10Rik, 4930529O08Rik, Dlst,
DLTS, ENSMUSG00000004789, MGI:1926170,
NCBI:78920, OFF:Dlst

Chr 12

ORFs

56 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
324504	102	TTG ...	LAH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Spleen_B_cell, v6-5
1489066	141	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
330905	150	GTG ...	VVP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
1300231	162	AAG ...	KIW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
325118	138	ATG ...	MVV ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, Spleen_B_cell
331291	66	CTG ...	LPL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
9790	33	ATG ...	MQI ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Skin_tumor, v6-5
330910	69	CTG ...	LLP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
940051	72	AGG ...	RLH ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
329323	48	TTG ...	LTG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
326382	60	CTG ...	LPS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, Spleen_B_cell, v6-5
329783	117	TTG ...	LAH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Spleen_B_cell, v6-5
460221	33	CTG ...	LLK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
1296660	42	AGG ...	RRN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
327835	63	CTG ...	LLP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, Spleen_B_cell
331015	51	CTG ...	LRQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
1299942	129	ACG ...	TEE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
461034	63	CTG ...	LPS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Spleen_B_cell
1299058	114	ACG ...	TEE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
666598	54	TTG ...	LLP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC
1488745	99	ATG ...	MQP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1300226	51	AGG ...	RRN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
327544	162	ATG ...	MNL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
330347	153	ATG ...	MVV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
328957	87	CTG ...	LTT ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, Spleen_B_cell, v6-5
938990	102	ATG ...	MMQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, NSC
461352	63	GTG ...	VLQ ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC, Spleen_B_cell, v6-5
327072	90	TTG ...	LEH ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Spleen_B_cell, v6-5
325767	135	GTG ...	VVP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, NSC, Spleen_B_cell
460950	105	ATG ...	MQP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
1298319	147	AAG ...	KIW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
330148	75	CTG ...	LPS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell, v6-5
323317	156	TTG ...	LPL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, NSC, Spleen_B_cell, v6-5
461273	39	CTG ...	LLK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
331368	165	TTG ...	LKI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, v6-5
939674	111	ATG ...	MGA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
323528	60	CTG ...	LPL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, Spleen_B_cell
667829	60	TTG ...	LQL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC, v6-5
939684	81	AGG ...	RSF ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
458276	33	TTG ...	LTG ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, Spleen_B_cell, v6-5
461301	30	CTG ...	LPS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, Spleen_B_cell
327603	45	CTG ...	LRQ ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell
940817	75	AGG ...	RLH ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
321400	150	TTG ...	LKI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, NSC, Spleen_B_cell, v6-5
458092	33	CTG ...	LPS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell
1300098	78	ATT ...	IIL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1488640	105	TTG ...	LMM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1488437	165	CTG ...	LCR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
331254	177	ATG ...	MNL ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
1298068	42	ACG ...	TPS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
461063	111	TTG ...	LMM ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1300317	57	ACG ...	TPS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
461250	72	TTG ...	LTS ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
330272	171	TTG ...	LPL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
330397	105	TTG ...	LEH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, v6-5
460817	108	ATG ...	MMQ ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5

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