Transcript 446524

Transcript

ID CARD

MetamORF ID

446524

ENSMUST00000140543

Name

Dhx58-204

Strand

Biotype

processed_transcript

Start-end positions

100695063-100696620

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:80861

Aliases

B430001I08Rik,
D11Lgp2e, Dhx58, ENSMUSG00000017830,
Lgp2, LPG2, MGI:1931560,
NCBI:80861, OFF:Dhx58, RLR-3

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
452846	45	CTG ...	LQD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
446523	69	GTG ...	VVP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
449734	150	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
452718	168	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
453350	33	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
452293	87	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
454147	75	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
450313	144	GTG ...	VLK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
451378	195	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
446786	39	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
452366	75	GTG ...	VPF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
455295	255	GTG ...	VVI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
452746	156	GTG ...	VTL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell
453221	120	CTG ...	LET ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Liver, Spleen_B_cell

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