Transcript 901444

Transcript

ID CARD

MetamORF ID

901444

ENSMUST00000198378

Name

Dhx15-204

Strand

Biotype

retained_intron

Start-end positions

52158665-52161633

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:13204

Aliases

DBP1,
Ddx15, DEAH9, Dhx15,
ENSMUSG00000029169, HRH2, mDEAH9,
MGI:1099786, NCBI:13204, OFF:Dhx15

Chr 5

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
902674	42	ATC ...	IHD ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1238648	93	AGG ...	RLY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
903048	36	ATA ...	IQR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1235213	216	ATC ...	IHS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1237302	87	AAG ...	KLG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
175654	42	ATG ...	MTW ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC
1310564	99	TTG ...	LQL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
180566	51	TTG ...	LVL ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1238430	129	ATC ...	ILR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
902087	93	CTG ...	LKK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
183874	45	TTG ...	LMT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1512151	33	ATG ...	MLQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1020296	126	CTG ...	LRS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF
1240175	78	ATT ...	IDD ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1237814	69	TTG ...	LVH ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1019429	102	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF

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