Transcript 175655

Transcript

ID CARD

MetamORF ID

175655

ENSMUST00000031061

Name

Dhx15-201

Strand

Biotype

protein_coding

Start-end positions

52150203-52190514

CDS Start-stop positions

52150661-52190350

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:13204

Aliases

DBP1,
Ddx15, DEAH9, Dhx15,
ENSMUSG00000029169, HRH2, mDEAH9,
MGI:1099786, NCBI:13204, OFF:Dhx15

Chr 5

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
832266	78	GTG ...	VWS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
573566	105	CTG ...	LDG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
175654	42	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
560039	36	TTG ...	LVR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
180566	51	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
833347	126	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
190378	117	ATG ...	MGK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
570477	72	CTG ...	LDG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
177468	81	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF, R1E
523175	42	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
524476	297	TTG ...	LFQ ...	Ribo-seq	TTG		5	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Brain, Spleen_B_cell
562039	99	CTG ...	LYG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
834440	84	TTG ...	LSH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
574175	150	TTG ...	LLD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1467743	30	CTG ...	LTG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
570945	90	CTG ...	LGN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
833029	105	GTG ...	VVC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
563342	33	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
566355	135	TTG ...	LMI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
186318	129	GTG ...	VRG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
566196	114	TTG ...	LVI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
573492	186	CTG ...	LYG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
832264	102	GTG ...	VCG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
518850	141	GTG ...	VKL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
519306	93	ATG ...	MYA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
517337	51	TTG ...	LSH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
569321	111	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
571715	198	CTG ...	LGV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF
833851	132	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1310746	87	CTG ...	LDT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
519758	102	CTG ...	LQT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
183874	45	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1560167	75	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
832772	63	TTG ...	LRF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
182885	36	GTG ...	VWL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
522653	63	TTG ...	LLD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
516897	114	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1560390	93	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
520175	39	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
573956	111	GTG ...	VTT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
569108	120	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
1312211	105	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
834444	120	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
572897	192	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, MEF
573168	120	TTG ...	LQV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
524567	147	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
518879	45	TTG ...	LYL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
834319	123	TTG ...	LVR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
574641	60	TTG ...	LDT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
569225	132	ATG ...	MIW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain

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