Transcript 59858 | MetamORF

Transcript

ID CARD

MetamORF ID

59858

ENSMUST00000146241

Name

Dhdds-210

Strand

Biotype

processed_transcript

Start-end positions

133969175-134000871

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:67422

Aliases

3222401G21Rik,
cis-IPTase, CIT, Dhdds,
DS, ENSMUSG00000012117, HDS,
MGI:1914672, NCBI:67422, OFF:Dhdds,
W91638

Chr 4

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
511449	162	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
58565	54	CTG ...	LCE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
510094	48	CTG ...	LRS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
57261	84	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
58197	69	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
151236	48	ATG ...	MDQ ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell
513174	78	GTG ...	VGM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
512090	54	TTG ...	LEL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
59645	270	CTG ...	LQF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, v6-5
512582	132	TTG ...	LNL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell
59930	252	CTG ...	LAV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
512738	111	GTG ...	VTV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell
512284	51	GTG ...	VFE ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
57205	39	CTG ...	LQF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
161915	63	GTG ...	VER ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell
510275	45	GTG ...	VEL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
513427	174	GTG ...	VTE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
511122	72	ATG ...	MPN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
511645	87	GTG ...	VGS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
513368	63	CTG ...	LKA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
512182	48	CTG ...	LDL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E, Spleen_B_cell
1657676	54	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
163414	135	GTG ...	VIC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
510044	51	CTG ...	LDV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
511974	108	TTG ...	LHK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
59425	99	GTG ...	VCI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
514158	54	CTG ...	LVF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Spleen_B_cell
59857	165	CTG ...	LWE ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
509722	195	CTG ...	LER ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
60204	219	GTG ...	VIS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
147186	51	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
57956	114	CTG ...	LQK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
57647	75	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
60912	171	CTG ...	LSL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Liver, Neutrophil, R1E, Spleen_B_cell, Testis
513648	48	ATG ...	MSA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
59657	285	CTG ...	LCE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, R1E, v6-5
57726	60	TTG ...	LDL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
58868	66	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
510876	69	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
147635	69	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
511484	81	CTG ...	LWP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
510917	30	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
58257	96	GTG ...	VFQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Spleen_B_cell
513195	63	CTG ...	LRP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil, Spleen_B_cell
509834	126	CTG ...	LGI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E, Spleen_B_cell
513242	39	TTG ...	LHT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell

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