Transcript 1091 | MetamORF

Transcript

ID CARD

MetamORF ID

1091

ENSMUST00000047973

Name

Dhcr24-201

Strand

Biotype

protein_coding

Start-end positions

106561038-106589113

CDS Start-stop positions

106561167-106586765

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:74754

Aliases

2310076D10Rik,
5830417J06Rik, Dhcr24, ENSMUSG00000034926,
MGI:1922004, mKIAA0018, NCBI:74754,
OFF:Dhcr24

Chr 4

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
156467	39	ATG ...	MAC ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
1227946	36	ACG ...	TWT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
898007	42	ATA ...	IST ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
164654	162	GTG ...	VRR ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
549167	141	CTG ...	LSR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, E14, Liver
161057	84	CTG ...	LVL ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
156183	132	ATG ...	MSS ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
153129	87	GTG ...	VKN ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC
146536	78	CTG ...	LWD ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell
146675	51	CTG ...	LSR ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC
159551	51	TTG ...	LAV ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, v6-5
1505	159	CTG ...	LHE ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
149625	165	CTG ...	LPR ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC
1233883	84	AGG ...	RPC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1226894	42	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
154839	117	TTG ...	LSL ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E
1233168	198	ATA ...	IRG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1231592	66	AGG ...	RAR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
510119	36	GTG ...	VHV ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC, Spleen_B_cell, v6-5
513437	144	CTG ...	LDG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, R1E, Spleen_B_cell, v6-5
897242	90	ACG ...	TQA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
897676	75	ATT ...	ILG ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
158540	207	ATG ...	MPC ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC
1225928	57	ATA ...	IAL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1226144	30	ACG ...	TWC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1231163	201	ATA ...	IRG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
900170	105	ATA ...	IRR ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
157155	54	GTG ...	VPI ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, NSC, Spleen_B_cell, v6-5
1231340	48	AAG ...	KQS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1230048	63	ATC ...	IPR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1231490	189	ACG ...	TCE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1233872	255	ACG ...	TAA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
897744	210	AGG ...	RHR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1231736	36	AGG ...	RPC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
151098	66	GTG ...	VHG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
158241	48	CTG ...	LAH ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
154965	228	CTG ...	LKT ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, NSC
151183	39	TTG ...	LFE ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, v6-5
1233532	186	ACG ...	TCE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
156395	72	CTG ...	LGD ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell
1090	96	TTG ...	LLY ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
511737	60	CTG ...	LAV ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, R1E, Spleen_B_cell, v6-5
1229919	57	AGG ...	REM ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
510925	51	GTG ...	VRR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
153388	111	CTG ...	LFG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC
153046	189	GTG ...	VGP ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC
1230603	108	ACG ...	TGG ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
150610	51	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5

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