Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

13949

ID

ENSMUST00000025649

Name

Ddb1-201

Strand

+

Biotype

protein_coding

Start-end positions

10605625-10629813

CDS Start-stop positions

10605706-10629162

CDS Relative positions

-

Sequences

Transcript sequence

TGG ...

Gene

ID

NCBI:13194

Aliases

127kDa,
AA408517, Ddb1, ENSMUSG00000024740,
MGI:1202384, NCBI:13194, OFF:Ddb1,
p127-Ddb1


Chr 19

ORFs

130 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1679201 36

TTG ...

LIM ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
963444 198

ATC ...

ILT ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
411607 48

CTG ...

LSE ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12, MEF, Neutrophil
1201816 66

AGG ...

RNQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
725014 144

GTG ...

VWP ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
1205473 84

AGG ...

RRS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204958 189

AAG ...

KLW ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1679712 30

ATG ...

MTS ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
43453 156

TTG ...

LAP ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Liver, MEF, Testis,
v6-5
1203979 66

AAG ...

KEL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
409155 114

ATG ...

MGS ...

Ribo-seq
ATG 10 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, NSC,
R1E
727390 108

CTG ...

LRR ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Liver, Neutrophil,
v6-5
726243 114

TTG ...

LLP ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
1160410 66

TTG ...

LCL ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
719172 51

ATG ...

MAL ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E
726233 117

ATG ...

MWS ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Glioma, Liver,
MEF, MESC, Neutrophil,
v6-5
1204845 156

AGG ...

RNQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
859145 39

TTG ...

LKS ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
1051681 60

TTG ...

LQS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Neutrophil
1545039 60

ATG ...

MAS ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
1201499 108

ATC ...

IVA ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
1157611 60

ATG ...

MRC ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
718376 66

ATG ...

MSS ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, v6-5
1634903 36

TTG ...

LDF ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1416383 51

CTG ...

LLS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
961962 75

ATA ...

ITG ...

Ribo-seq
ATA moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
858639 81

TTG ...

LLA ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
v6-5
860106 78

TTG ...

LWT ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, MEF, v6-5
963086 153

ATG ...

MTI ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, R1E
858265 60

TTG ...

LGS ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver
859831 105

ATG ...

MSL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, v6-5
804724 30

GTG ...

VSS ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
1205280 81

AGG ...

RWE ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
725193 174

GTG ...

VPS ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, v6-5
962605 57

ACG ...

TIS ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
14610 30

GTG ...

VSE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
1633385 39

TTG ...

LPT ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1205420 84

ACG ...

TSL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204860 120

ATA ...

ISR ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1773087 57

ATG ...

MAR ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
488548 81

ATG ...

MRS ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
858539 60

CTG ...

LSS ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver
1203745 108

ATG ...

MLG ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC
1157335 51

TTG ...

LWI ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, v6-5
489465 96

GTG ...

VLP ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
42324 63

TTG ...

LWT ...

Ribo-seq
TTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
725257 162

TTG ...

LDR ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, MEF,
v6-5
1634997 30

ATG ...

MVL ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
859099 42

GTG ...

VIN ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
v6-5
1050664 45

GTG ...

VER ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil, NSC
1205319 72

ACG ...

TIS ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
723436 42

TTG ...

LSS ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
R1E, v6-5
725566 174

GTG ...

VQW ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E
724356 84

GTG ...

VPS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
Neutrophil, NSC, v6-5
726209 180

TTG ...

LEV ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
v6-5
1205503 93

AGG ...

RNC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
726796 138

ATG ...

MPV ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Glioma, Liver,
MEF, MESC, R1E,
v6-5
13971 87

GTG ...

VQW ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Skin_tumor
1204985 135

CTG ...

LKM ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, R1E
1204506 156

ATG ...

MMT ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, R1E
960354 63

ATC ...

IWA ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1203494 87

ACG ...

TSL ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
14531 48

CTG ...

LKM ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
724226 72

TTG ...

LDR ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
NSC, v6-5
41683 81

CTG ...

LRR ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Liver, MEF,
Neutrophil, Testis, v6-5
859848 78

TTG ...

LMS ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, v6-5
13948 66

ATG ...

MTI ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
1457672 39

GTG ...

VWW ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1204431 225

ATA ...

ICV ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
804934 33

TTG ...

LQS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Neutrophil
43527 144

ATG ...

MRS ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Testis, v6-5
727213 111

TTG ...

LPW ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E
1205033 69

ACG ...

TGR ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
491960 129

ATG ...

MPL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, R1E, Spleen_B_cell,
v6-5
720343 36

GTG ...

VAT ...

Ribo-seq
GTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver,
MEF, NSC, v6-5
726464 138

CTG ...

LCT ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC, R1E
1365239 99

TTG ...

LTS ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, R1E
858108 78

ATG ...

MPV ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, NSC
1158860 57

TTG ...

LCL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1201252 45

ACG ...

TVI ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
487306 84

CTG ...

LMR ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
42913 90

ATG ...

MWS ...

Ribo-seq
ATG 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Liver, MEF,
Neutrophil, R1E, Testis,
v6-5
1632775 60

TTG ...

LCH ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, R1E
43451 195

CTG ...

LTV ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Liver, MEF, Testis,
v6-5
1205422 69

AGG ...

RSS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
725859 204

ATG ...

MAI ...

Ribo-seq
ATG 10 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, R1E,
v6-5
405450 96

CTG ...

LPW ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, R1E, Spleen_B_cell,
v6-5
1205091 135

ACG ...

TVI ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
407915 45

CTG ...

LSP ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, R1E
1204884 168

AAG ...

KSL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204331 75

ACG ...

TSL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1722160 30

TTG ...

LPE ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
724701 84

TTG ...

LCA ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
860058 60

ATG ...

MVV ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
1200480 90

ATC ...

ICE ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1204512 198

AAG ...

KSP ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
723100 69

TTG ...

LMS ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
R1E, v6-5
722550 90

CTG ...

LLN ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
MEF, NSC, R1E
859941 75

ATG ...

MSS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, v6-5
1633601 42

GTG ...

VPL ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1201396 66

AGG ...

RRS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1634356 45

TTG ...

LDR ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
963573 126

ATA ...

IFA ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
1204878 69

ATG ...

MAL ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
R1E
1364517 57

TTG ...

LVA ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
410569 66

TTG ...

LPT ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, NSC, v6-5
1202216 30

ACG ...

TWL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202939 54

AGG ...

RWE ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1200675 78

AGG ...

RSG ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
725263 150

CTG ...

LLN ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Liver, R1E, v6-5
409201 126

CTG ...

LPW ...

Ribo-seq
CTG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
R1E, Spleen_B_cell, v6-5
490721 69

GTG ...

VPY ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, Spleen_B_cell
1417028 51

GTG ...

VAT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
963120 63

CTG ...

LSP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, R1E
1679217 36

CTG ...

LQM ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
725296 132

GTG ...

VIN ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Liver,
v6-5
1544966 42

CTG ...

LSV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
723503 60

CTG ...

LCT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC
963710 159

AGG ...

RAR ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
722908 90

TTG ...

LEV ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
Neutrophil, NSC, v6-5
858881 72

CTG ...

LTG ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, v6-5
1634137 30

GTG ...

VDH ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
491535 105

TTG ...

LET ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, Spleen_B_cell
14157 69

ATG ...

MMT ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
1205256 144

AAG ...

KEL ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
487447 93

CTG ...

LPP ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E, Spleen_B_cell
403448 72

ATG ...

MSG ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, R1E
725008 111

GTG ...

VAK ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
1203345 84

AGG ...

RNC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1205670 120

AGG ...

RWL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5