Transcript 5261 | MetamORF

Transcript

ID CARD

MetamORF ID

5261

ENSMUST00000131839

Name

Dctn6-205

Strand

Biotype

processed_transcript

Start-end positions

34090578-34107814

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:22428

Aliases

AU044699,
Dctn6, ENSMUSG00000031516, MGI:1343154,
NCBI:22428, OFF:Dctn6, p27,
WS-3

Chr 8

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
79051	75	CTG ...	LMK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
80868	36	CTG ...	LIE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, v6-5
79911	54	TTG ...	LGL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, NSC
1105705	114	GTG ...	VCL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
82876	219	CTG ...	LTS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1581288	117	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1326532	39	CTG ...	LHH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1326805	33	CTG ...	LHR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
82280	237	GTG ...	VGR ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1583287	138	TTG ...	LKQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
80541	69	GTG ...	VIY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
417111	72	AAG ...	KIA ...	Ribo-seq	AAG		3	sORFs_org_Mouse	ncRNA sORF	C2C12, E14, MEF
242609	42	GTG ...	VCR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1520934	33	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
416870	114	AAG ...	KIA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	MEF
79053	138	CTG ...	LTS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil
608852	63	TTG ...	LPN ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5
79400	156	GTG ...	VGR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, Testis
5260	99	GTG ...	VIH ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, Skin_tumor, v6-5
80441	84	CTG ...	LDF ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
1580409	90	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
82287	150	GTG ...	VIY ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
82657	75	GTG ...	VKI ...	Ribo-seq	GTG		9	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, MEF, Neutrophil, NSC, Testis, v6-5
5834	51	GTG ...	VCV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, Skin_tumor, Testis, v6-5
237321	45	CTG ...	LKK ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, v6-5

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