Transcript 72915 | MetamORF

Transcript

ID CARD

MetamORF ID

72915

ENSMUST00000123602

Name

Dctn5-202

Strand

Biotype

retained_intron

Start-end positions

122133054-122149044

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:59288

Aliases

4930427E12Rik,
b2b315Clo, C78178, Dctn5,
ENSMUSG00000030868, MGI:1891689, NCBI:59288,
OFF:Dctn5

Chr 7

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1689078	57	GTG ...	VWS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
226839	81	CTG ...	LQN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
75944	96	CTG ...	LAN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, Neutrophil, Spleen_B_cell, Testis, v6-5
1689830	87	TTG ...	LGI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
211662	84	CTG ...	LLQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
218740	36	TTG ...	LVL ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, Spleen_B_cell, v6-5
211131	69	CTG ...	LGT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
3585	66	CTG ...	LYH ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, MEF
1690230	45	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
223674	45	CTG ...	LFC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain
217095	36	GTG ...	VEA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Liver, MEF
226409	87	CTG ...	LFA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1689372	78	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
1689572	30	TTG ...	LLL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
215073	66	CTG ...	LDG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
73587	42	TTG ...	LTS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, Testis
1576647	108	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
213978	36	ATG ...	MTV ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, Liver, MEF
216692	99	TTG ...	LCI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
72914	63	GTG ...	VKS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
75053	60	CTG ...	LMI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Testis
226737	108	TTG ...	LHS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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