Transcript 1201382

Transcript

ID CARD

MetamORF ID

1201382

ENSMUST00000195394

Name

Dcaf8-211

Strand

Biotype

retained_intron

Start-end positions

172148089-172188581

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:98193

Aliases

AA408877,
AA433120, AA792214, AU018973,
C76055, D1Dau35e, D1Ucla4,
Dcaf8, ENSMUSG00000026554, H326,
MGI:91860, NCBI:98193, OFF:Dcaf8,
Wdr42a

Chr 1

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
351496	105	GTG ...	VTK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1125172	30	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
308277	81	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
368721	81	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1141285	36	TTG ...	LRV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
390410	45	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
226766	195	TTG ...	LQH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
998814	126	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1000211	99	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
307844	81	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
299785	240	GTG ...	VYE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
318614	84	GTG ...	VNS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, R1E
506331	93	ATG ...	MDR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
357681	60	GTG ...	VNP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
345052	30	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
328490	66	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
104532	153	TTG ...	LHF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1403811	63	CTG ...	LDF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
459775	123	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
394288	54	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
1000724	96	GTG ...	VVW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
465703	126	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
400141	93	GTG ...	VWD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
385179	75	CTG ...	LYT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
375314	105	GTG ...	VDG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
477380	102	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1201381	192	ACG ...	TAQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
468578	60	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
348926	108	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
478976	66	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver

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