Transcript 848809

Transcript

ID CARD

MetamORF ID

848809

ENSMUST00000152681

Name

Dcaf11-216

Strand

Biotype

nonsense_mediated_decay

Start-end positions

55560534-55570061

CDS Start-stop positions

55561288-55562975

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:28199

Aliases

0710008A13Rik,
C76035, D14Ucla1, Dacf11,
Dcaf11, ENSMUSG00000022214, GLO14,
MGI:90168, NCBI:28199, OFF:Dcaf11,
Wdr23

Chr 14

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
849571	105	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF Upstream	Liver
421088	75	CTG ...	LVF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	Liver
675844	30	ATG ...	MFP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF Upstream	Liver
1851400	120	TTG ...	LPN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
849760	60	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Liver
675959	156	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Liver
29335	45	TTG ...	LET ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Liver, R1E
849056	45	TTG ...	LHP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF Upstream	Liver, R1E
466121	204	TTG ...	LRK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Liver
676521	177	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Liver
347637	87	ATG ...	MGN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF Upstream	Liver, R1E
849136	72	ATG ...	MGT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	Liver
849398	63	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	Liver
675823	54	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	Liver, R1E
848950	126	CTG ...	LWQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, R1E
676881	84	CTG ...	LET ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Liver
849622	81	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
849194	36	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
421002	42	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
848953	87	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Liver
849479	99	TTG ...	LVR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF Upstream	Liver
848831	39	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Liver

Export data