Transcript 43734 | MetamORF

Transcript

ID CARD

MetamORF ID

43734

ENSMUST00000051234

Name

Cuedc2-201

Strand

Biotype

protein_coding

Start-end positions

46329812-46338660

CDS Start-stop positions

46330688-46332691

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:67116

Aliases

3010002G01Rik,
Cuedc2, ENSMUSG00000036748, MGI:1914366,
NCBI:67116, OFF:Cuedc2

Chr 19

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
490478	36	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
407337	108	GTG ...	VAW ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
1007979	273	CTG ...	LGW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Brain
409038	138	ATG ...	MLG ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
488697	54	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
409981	108	GTG ...	VYL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
722767	264	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
403036	75	TTG ...	LGS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Spleen_B_cell
410761	276	CTG ...	LQD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	CDS sORF	Brain
409095	219	TTG ...	LAT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
405229	81	ATG ...	MCL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
724855	30	ATG ...	MSG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
410027	225	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
407618	99	ATG ...	MKS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
402453	129	CTG ...	LRQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
488200	99	GTG ...	VSK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
92012	234	TTG ...	LAF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
410513	210	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
43733	240	GTG ...	VAG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	CDS sORF	Brain, Testis
1545891	237	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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