Metam
ORF

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Transcript

ID CARD

MetamORF ID

10736

ID

ENSMUST00000006235

Name

Ctsb-201

Strand

+

Biotype

protein_coding

Start-end positions

63122462-63145923

CDS Start-stop positions

63133341-63142329

CDS Relative positions

-

Sequences

Transcript sequence

AGC ...

Gene

ID

NCBI:13030

Aliases

CB,
Ctsb, ENSMUSG00000021939, MGI:88561,
NCBI:13030, OFF:Ctsb


Chr 14

ORFs

109 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

30140 180

CTG ...

LTE ...

Ribo-seq
CTG 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5
10905 30

CTG ...

LAG ...

Ribo-seq
CTG moderate 21 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
11017 81

ATG ...

MVA ...

Ribo-seq
ATG strong 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, Testis
29169 30

TTG ...

LPA ...

Ribo-seq
TTG weak 15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell, Testis,
v6-5
28658 36

GTG ...

VAT ...

Ribo-seq
GTG moderate 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
1307798 138

AAG ...

KEI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
947295 297

ATC ...

IYL ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
944744 33

AGG ...

RRY ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1306735 240

GTG ...

VHG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
29558 54

GTG ...

VVV ...

Ribo-seq
GTG strong 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
947043 138

AGG ...

RCL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
347516 36

CTG ...

LTS ...

Ribo-seq
CTG moderate 9 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF, Neutrophil, NSC
29463 45

GTG ...

VPM ...

Ribo-seq
GTG weak 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Testis, v6-5
946773 117

ACG ...

TWR ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
10916 66

CTG ...

LEH ...

Ribo-seq
CTG moderate 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
946321 111

AGG ...

RCL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
946462 42

ACG ...

TGT ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
849666 171

ATG ...

MSM ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF, Neutrophil, NSC
347901 72

CTG ...

LSL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
BMDC, Brain
849764 144

CTG ...

LEK ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, Neutrophil, NSC
29414 57

TTG ...

LWL ...

Ribo-seq
TTG moderate 17 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis
30195 153

GTG ...

VHG ...

Ribo-seq
GTG 15 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis
10870 78

GTG ...

VAI ...

Ribo-seq
GTG strong 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, Testis, v6-5
10818 90

CTG ...

LKP ...

Ribo-seq
CTG 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
947356 90

ACG ...

TAV ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
29570 78

CTG ...

LRA ...

Ribo-seq
CTG weak 21 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
947076 189

AAG ...

KPF ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
346456 30

GTG ...

VPS ...

Ribo-seq
GTG moderate 14 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, Spleen_B_cell
11171 279

ATG ...

MHG ...

Ribo-seq
ATG 23 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
946261 162

AAG ...

KPF ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
10872 57

CTG ...

LGS ...

Ribo-seq
CTG strong 19 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
29274 30

GTG ...

VDP ...

Ribo-seq
GTG 15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis,
v6-5
348406 33

GTG ...

VIT ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
Brain
944707 57

ATT ...

ILI ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
BMDC
946266 30

AGG ...

RPR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
946410 30

ACG ...

TPS ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
946663 99

AAG ...

KTC ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
30319 201

TTG ...

LGQ ...

Ribo-seq
TTG 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5
10892 75

GTG ...

VAL ...

Ribo-seq
GTG strong 20 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
29584 39

ATG ...

MTS ...

Ribo-seq
ATG weak 21 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, Neutrophil,
NSC, R1E, Spleen_B_cell,
Testis, v6-5
349661 144

ATG ...

MHE ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    sORF
Brain, Glioma, Liver,
MEF, MESC
30191 108

GTG ...

VVS ...

Ribo-seq
GTG 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis, v6-5
353543 96

GTG ...

VGT ...

Ribo-seq
GTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
1306798 210

TTG ...

LAW ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
849662 165

ATG ...

MAP ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
MEF, Neutrophil, NSC
29821 51

GTG ...

VVL ...

Ribo-seq
GTG strong 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
10862 54

CTG ...

LDK ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, NSC,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
10752 39

CTG ...

LSW ...

Ribo-seq
CTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, Testis
945465 132

ATA ...

ILP ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
29624 51

CTG ...

LES ...

Ribo-seq
CTG moderate 17 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, BMDC, Brain,
C2C12, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
28456 81

GTG ...

VSA ...

Ribo-seq
GTG weak 17 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, Spleen_B_cell, Testis,
v6-5
347359 45

ATG ...

MAQ ...

Ribo-seq
ATG strong 14 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, NSC, Spleen_B_cell
10822 33

ATG ...

MVQ ...

Ribo-seq
ATG strong 20 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell
11274 60

GTG ...

VAL ...

Ribo-seq
GTG 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis
10898 45

GTG ...

VAL ...

Ribo-seq
GTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell, Testis
944611 177

AGG ...

RGV ...

Ribo-seq
AGG strong 1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
BMDC
10735 45

TTG ...

LDR ...

Ribo-seq
TTG 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis
946436 183

AGG ...

RAL ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Downstream
    sORF
BMDC
946062 30

AGG ...

RWS ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
947064 30

AGG ...

RPR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
1000020 108

GTG ...

VKL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
944560 93

ATA ...

IHH ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
946086 105

CTG ...

LLK ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF
30207 162

ATG ...

MEL ...

Ribo-seq
ATG 21 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
30328 129

CTG ...

LKT ...

Ribo-seq
CTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
944570 126

TTG ...

LDD ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
BMDC
30154 123

TTG ...

LAW ...

Ribo-seq
TTG 18 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
945854 84

TTG ...

LAR ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Downstream
    sORF
BMDC
346637 102

CTG ...

LPA ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
Brain
351288 171

CTG ...

LRG ...

Ribo-seq
CTG 14 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell
344687 153

CTG ...

LTE ...

Ribo-seq
CTG 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil
11011 81

TTG ...

LMH ...

Ribo-seq
TTG 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
28878 90

ATG ...

MEF ...

Ribo-seq
ATG 15 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, Testis
29753 45

ATG ...

MHW ...

Ribo-seq
ATG weak 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
30307 90

CTG ...

LRS ...

Ribo-seq
CTG 18 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis
30388 30

CTG ...

LWY ...

Ribo-seq
CTG 16 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Spleen_B_cell, Testis,
v6-5
999549 102

CTG ...

LAT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
30365 132

CTG ...

LLK ...

Ribo-seq
CTG 18 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, MEF,
Neutrophil, NSC, Spleen_B_cell,
Testis, v6-5
945771 93

ATG ...

MKL ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Downstream
    sORF
BMDC, Glioma, Liver,
MEF, MESC
30483 153

CTG ...

LDK ...

Ribo-seq
CTG 18 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell, Testis, v6-5
947320 129

AGG ...

RWS ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
946235 72

AGG ...

RRS ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1308099 102

CTG ...

LKT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
11194 282

TTG ...

LMH ...

Ribo-seq
TTG 21 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
11039 63

ATG ...

MEL ...

Ribo-seq
ATG 20 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
945476 126

AAG ...

KIW ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
BMDC
11157 45

GTG ...

VDP ...

Ribo-seq
GTG 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
30036 156

ATG ...

MAE ...

Ribo-seq
ATG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Spleen_B_cell, Testis,
v6-5
10948 69

TTG ...

LNQ ...

Ribo-seq
TTG moderate 18 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell, Testis
946611 66

CTG ...

LDQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Downstream
    sORF
BMDC
11159 246

TTG ...

LDR ...

Ribo-seq
TTG 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Skin_tumor, Spleen_B_cell, Testis
30369 111

CTG ...

LQA ...

Ribo-seq
CTG 19 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
421127 60

ATA ...

IST ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
11210 291

CTG ...

LKP ...

Ribo-seq
CTG 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
11182 54

CTG ...

LSW ...

Ribo-seq
CTG 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis
30084 33

TTG ...

LLW ...

Ribo-seq
TTG 17 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
R1E, Spleen_B_cell, Testis,
v6-5
421020 30

ATC ...

IQH ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12
29175 102

CTG ...

LLT ...

Ribo-seq
CTG moderate 19 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell, Testis,
v6-5
945766 33

ATC ...

IRN ...

Ribo-seq
ATC weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
344039 174

TTG ...

LGQ ...

Ribo-seq
TTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
Liver, MEF, Neutrophil
11137 54

GTG ...

VWH ...

Ribo-seq
GTG 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
785601 30

CTG ...

LDA ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Liver, MEF
420916 33

ATA ...

IST ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
10912 45

CTG ...

LHS ...

Ribo-seq
CTG moderate 20 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
947240 126

AAG ...

KTC ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
946052 96

ATC ...

IYL ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
947104 144

ACG ...

TWR ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
10780 78

ATG ...

MHG ...

Ribo-seq
ATG 22 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Skin_tumor, Spleen_B_cell,
Testis, v6-5
945069 129

ATG ...

MAE ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5