Transcript 883060

Transcript

ID CARD

MetamORF ID

883060

ENSMUST00000154356

Name

Ctnnb1-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

120933475-120960506

CDS Start-stop positions

120950221-120957536

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:12387

Aliases

Bfc,
Catnb, Ctnnb1, ENSMUSG00000006932,
Mesc, MGI:88276, NCBI:12387,
OFF:Ctnnb1

Chr 9

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
883574	39	ATG ...	MTR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
261283	114	TTG ...	LMG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, R1E
6451	36	ATG ...	MRS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
884190	132	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
883608	36	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
258990	39	GTG ...	VDT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
623944	69	ATG ...	MPS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
619976	66	ATG ...	MWS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
267245	126	CTG ...	LTI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E
434992	156	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
269376	129	GTG ...	VLT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E
619208	51	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
1114655	42	CTG ...	LVD ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
83425	225	GTG ...	VCQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
269121	81	CTG ...	LGH ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, R1E
436938	204	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
265010	159	CTG ...	LLH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
884456	54	CTG ...	LAI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
1830514	57	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
438235	87	CTG ...	LHN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
883216	144	GTG ...	VAT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E
257268	48	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
435435	93	TTG ...	LLN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
883071	57	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
617984	111	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
86022	66	CTG ...	LSY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
84851	216	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
619671	81	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
269811	171	CTG ...	LHN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF, R1E
619661	75	TTG ...	LYA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
884437	45	GTG ...	VDC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
255650	90	CTG ...	LPD ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, R1E
621425	78	CTG ...	LYC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
83861	69	TTG ...	LYE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
84649	165	TTG ...	LIR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
6074	33	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
83851	291	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
263447	132	CTG ...	LVL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E
883851	39	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
267266	51	CTG ...	LPP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, R1E
623209	114	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
263183	249	CTG ...	LME ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
254767	192	CTG ...	LFY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
620889	99	GTG ...	VAR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
257563	129	GTG ...	VRL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
883463	126	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
883978	162	TTG ...	LGM ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	Liver, R1E
255279	111	CTG ...	LQK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
263694	45	GTG ...	VDH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
84793	126	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
618560	84	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
261088	243	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
623705	57	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
617705	177	TTG ...	LDS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
84036	69	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
619627	87	ATG ...	MRA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
86614	123	TTG ...	LRE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
264849	153	ATG ...	MRW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, R1E
85439	87	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
268065	240	TTG ...	LDM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
435685	75	GTG ...	VKF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E
262709	111	ATG ...	MGC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, R1E
264422	102	CTG ...	LIW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
883310	33	TTG ...	LYA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
256691	66	TTG ...	LAI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, R1E

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